Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_C19
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0202 - 1638978-1639571                                           46   4e-05
02_01_0158 - 1103461-1104186                                           43   4e-04
04_04_0150 - 23130038-23130281,23130550-23130762,23130856-23133155     30   2.7  
04_04_1582 - 34590698-34591199,34593849-34594690                       29   3.6  
03_01_0483 + 3689155-3689814                                           29   4.8  
07_01_0561 + 4171812-4172144,4173468-4174253                           29   6.3  
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547           28   8.3  

>08_01_0202 - 1638978-1639571
          Length = 197

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +3

Query: 246 AEQVSGTVXWFNVKRGXGFIN-RXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVEFAV 422
           +E+V GTV WF+  +G GFI      +   V  S L S         RS+ DG  VEF+V
Sbjct: 3   SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKS------DGYRSLNDGDVVEFSV 56

Query: 423 VAGEKG-FEAAGVTGPGGEPVKG 488
            +G  G  +A  VT PGG  + G
Sbjct: 57  GSGNDGRTKAVDVTAPGGGALTG 79


>02_01_0158 - 1103461-1104186
          Length = 241

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = +3

Query: 261 GTVXWFNVKRGXGFIN-RXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVEFAVVAGEK 437
           GTV WFN  +G GFI+    ++   V  S + +         RS+ +G  VEFA+   E 
Sbjct: 9   GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKA------DGFRSLAEGEQVEFAISESED 62

Query: 438 G-FEAAGVTGPGGEPVKG 488
           G  +A  VTGP G  VKG
Sbjct: 63  GRTKAVDVTGPDGSFVKG 80


>04_04_0150 - 23130038-23130281,23130550-23130762,23130856-23133155
          Length = 918

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +3

Query: 330 CVCASXLPSPVTTHVKAVRSVGDGXAVEFAVVAGEKGFEAAGVTG 464
           CVC       ++  V+ VRS GDG A   +    E G EA GV G
Sbjct: 186 CVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTM-ESGLEACGVLG 229


>04_04_1582 - 34590698-34591199,34593849-34594690
          Length = 447

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 393 GDGXAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 515
           GDG   E +   G+KG    G  G GG   KGS  ++++ R
Sbjct: 229 GDGGVEEGSAGGGKKGGGGGGGGGGGGHGEKGSAKSSEQER 269


>03_01_0483 + 3689155-3689814
          Length = 219

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +3

Query: 393 GDGXAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 518
           GDG A      AG  G +AA   G G +PV+GS   +D  RG
Sbjct: 62  GDGGADPVRGSAG--GSDAARGDGGGADPVRGSAGGSDAARG 101



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 393 GDGXAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 518
           GDG   +  V     G +AA   G G +PV+GS   +D  RG
Sbjct: 81  GDGGGAD-PVRGSAGGSDAARGDGGGADPVRGSAGGSDAARG 121


>07_01_0561 + 4171812-4172144,4173468-4174253
          Length = 372

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +3

Query: 348 LPSPVTTHVKAVRSVGDGXAVEFAVVAGEKGFEAAGVTGPGGEPVKG 488
           +  P+   VK   S GDG  +E  VVAGE G  AA   G    P++G
Sbjct: 1   MDDPMLNAVKEEESHGDGGGLE--VVAGEDG-AAAVAAGVAPRPMEG 44


>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
          Length = 388

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/38 (44%), Positives = 17/38 (44%)
 Frame = +3

Query: 381 VRSVGDGXAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 494
           VR  G G A  FAV     G  A    G GGEP   SP
Sbjct: 53  VRGGGGGGAALFAVPRLFVGLAAKRGAGDGGEPASRSP 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,803,659
Number of Sequences: 37544
Number of extensions: 171890
Number of successful extensions: 538
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)