Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_C19
(861 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M83234-1|AAA59949.1| 320|Homo sapiens DNA-binding protein protein. 101 3e-21
X95325-1|CAA64631.1| 372|Homo sapiens DNA-binding protein protein. 101 4e-21
X72712-1|CAA51261.1| 372|Homo sapiens cold shock domain protein... 101 4e-21
M24069-1|AAA35749.1| 412|Homo sapiens protein ( Human DNA-bindi... 101 4e-21
L29071-1|AAA79243.1| 342|Homo sapiens DNA-binding protein A pro... 101 4e-21
BC021926-1|AAH21926.1| 372|Homo sapiens cold shock domain prote... 101 4e-21
BC015913-1|AAH15913.1| 303|Homo sapiens CSDA protein protein. 101 4e-21
BC015564-1|AAH15564.1| 372|Homo sapiens cold shock domain prote... 101 4e-21
BC008801-1|AAH08801.1| 372|Homo sapiens cold shock domain prote... 101 4e-21
AB209896-1|BAD93133.1| 134|Homo sapiens CSDA protein variant pr... 101 4e-21
M85234-1|AAA36569.1| 322|Homo sapiens nuclease sensitive elemen... 100 6e-21
M24070-1|AAA35750.1| 364|Homo sapiens protein ( Human DNA-bindi... 100 6e-21
L28809-1|AAA20871.1| 324|Homo sapiens protein ( Homo sapiens db... 100 6e-21
BC106045-1|AAI06046.1| 324|Homo sapiens Y box binding protein 1... 100 6e-21
BC098435-1|AAH98435.1| 324|Homo sapiens Y box binding protein 1... 100 6e-21
BC090038-1|AAH90038.1| 324|Homo sapiens Y box binding protein 1... 100 6e-21
BC072014-1|AAH72014.1| 266|Homo sapiens YBX1 protein protein. 100 6e-21
BC071708-1|AAH71708.1| 324|Homo sapiens Y box binding protein 1... 100 6e-21
BC070084-1|AAH70084.1| 324|Homo sapiens Y box binding protein 1... 100 6e-21
BC065571-1|AAH65571.1| 324|Homo sapiens Y box binding protein 1... 100 6e-21
BC038384-1|AAH38384.1| 324|Homo sapiens Y box binding protein 1... 100 6e-21
BC018393-1|AAH18393.1| 267|Homo sapiens Unknown (protein for IM... 100 6e-21
BC015208-1|AAH15208.1| 324|Homo sapiens Y box binding protein 1... 100 6e-21
BC010430-1|AAH10430.1| 324|Homo sapiens Y box binding protein 1... 100 6e-21
BC002411-1|AAH02411.1| 324|Homo sapiens Y box binding protein 1... 100 6e-21
BC000064-1|AAH00064.1| 266|Homo sapiens YBX1 protein protein. 100 6e-21
J03827-1|AAA61308.1| 317|Homo sapiens NFYA protein. 100 8e-21
BC009744-1|AAH09744.1| 303|Homo sapiens CSDA protein protein. 99 1e-20
BC047760-1|AAH47760.1| 364|Homo sapiens Y box binding protein 2... 98 3e-20
BC033800-1|AAH33800.1| 364|Homo sapiens Y box binding protein 2... 98 3e-20
AF096834-1|AAD30662.1| 364|Homo sapiens germ cell specific Y-bo... 98 3e-20
DQ120685-1|ABB92460.1| 319|Homo sapiens rcNSEP1 protein. 97 7e-20
AB208818-1|BAD92055.1| 268|Homo sapiens germ cell specific Y-bo... 69 2e-11
Z95329-1|CAI21661.2| 250|Homo sapiens lin-28 homolog B (C. eleg... 50 8e-06
DQ127228-1|AAZ38897.1| 250|Homo sapiens LIN28B protein. 50 8e-06
BC150538-1|AAI50539.1| 227|Homo sapiens Unknown (protein for IM... 50 8e-06
BC150537-1|AAI50538.1| 227|Homo sapiens Unknown (protein for IM... 50 8e-06
BC141960-1|AAI41961.1| 227|Homo sapiens LIN28B protein protein. 50 8e-06
BC127713-1|AAI27714.1| 227|Homo sapiens LIN28B protein protein. 50 8e-06
BC127712-1|AAI27713.1| 227|Homo sapiens LIN28B protein protein. 50 8e-06
AL135911-2|CAI20969.2| 250|Homo sapiens lin-28 homolog B (C. el... 50 8e-06
AK131411-1|BAD18558.1| 250|Homo sapiens protein ( Homo sapiens ... 50 8e-06
BC028566-1|AAH28566.1| 209|Homo sapiens LIN28 protein protein. 47 8e-05
AL513365-12|CAI21500.1| 209|Homo sapiens lin-28 homolog (C. ele... 47 8e-05
AK022519-1|BAB14075.1| 209|Homo sapiens protein ( Homo sapiens ... 47 8e-05
AF521099-1|AAM77751.1| 209|Homo sapiens RNA-binding protein LIN... 47 8e-05
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen... 31 7.1
X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1 p... 31 7.1
K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein. 31 7.1
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha... 31 7.1
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen... 31 7.1
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ... 31 7.1
>M83234-1|AAA59949.1| 320|Homo sapiens DNA-binding protein protein.
Length = 320
Score = 101 bits (242), Expect = 3e-21
Identities = 56/102 (54%), Positives = 64/102 (62%)
Frame = +3
Query: 228 KQKQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXA 407
+ K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG
Sbjct: 47 RDKKVIATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGET 105
Query: 408 VEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
VEF VV GEKG EAA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 106 VEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RNHYRRY 145
>X95325-1|CAA64631.1| 372|Homo sapiens DNA-binding protein protein.
Length = 372
Score = 101 bits (241), Expect = 4e-21
Identities = 56/102 (54%), Positives = 64/102 (62%)
Frame = +3
Query: 231 QKQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAV 410
+K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG V
Sbjct: 83 EKKVLATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETV 141
Query: 411 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQYF 536
EF VV GEKG EAA VTGP G PV+GS YAAD+RR R Y+
Sbjct: 142 EFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR-YRRGYY 182
>X72712-1|CAA51261.1| 372|Homo sapiens cold shock domain protein A
protein.
Length = 372
Score = 101 bits (241), Expect = 4e-21
Identities = 56/102 (54%), Positives = 64/102 (62%)
Frame = +3
Query: 231 QKQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAV 410
+K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG V
Sbjct: 83 EKKVLATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETV 141
Query: 411 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQYF 536
EF VV GEKG EAA VTGP G PV+GS YAAD+RR R Y+
Sbjct: 142 EFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR-YRRGYY 182
>M24069-1|AAA35749.1| 412|Homo sapiens protein ( Human DNA-binding
protein A (dbpA) gene, 3' end. ).
Length = 412
Score = 101 bits (241), Expect = 4e-21
Identities = 56/102 (54%), Positives = 64/102 (62%)
Frame = +3
Query: 231 QKQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAV 410
+K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG V
Sbjct: 153 EKKVLATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETV 211
Query: 411 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQYF 536
EF VV GEKG EAA VTGP G PV+GS YAAD+RR R Y+
Sbjct: 212 EFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR-YRRGYY 252
>L29071-1|AAA79243.1| 342|Homo sapiens DNA-binding protein A
protein.
Length = 342
Score = 101 bits (241), Expect = 4e-21
Identities = 56/102 (54%), Positives = 64/102 (62%)
Frame = +3
Query: 231 QKQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAV 410
+K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG V
Sbjct: 83 EKKVLATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETV 141
Query: 411 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQYF 536
EF VV GEKG EAA VTGP G PV+GS YAAD+RR R Y+
Sbjct: 142 EFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR-YRRGYY 182
>BC021926-1|AAH21926.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 101 bits (241), Expect = 4e-21
Identities = 56/102 (54%), Positives = 64/102 (62%)
Frame = +3
Query: 231 QKQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAV 410
+K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG V
Sbjct: 83 EKKVLATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETV 141
Query: 411 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQYF 536
EF VV GEKG EAA VTGP G PV+GS YAAD+RR R Y+
Sbjct: 142 EFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR-YRRGYY 182
>BC015913-1|AAH15913.1| 303|Homo sapiens CSDA protein protein.
Length = 303
Score = 101 bits (241), Expect = 4e-21
Identities = 56/102 (54%), Positives = 64/102 (62%)
Frame = +3
Query: 231 QKQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAV 410
+K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG V
Sbjct: 83 EKKVLATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETV 141
Query: 411 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQYF 536
EF VV GEKG EAA VTGP G PV+GS YAAD+RR R Y+
Sbjct: 142 EFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR-YRRGYY 182
>BC015564-1|AAH15564.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 101 bits (241), Expect = 4e-21
Identities = 56/102 (54%), Positives = 64/102 (62%)
Frame = +3
Query: 231 QKQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAV 410
+K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG V
Sbjct: 83 EKKVLATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETV 141
Query: 411 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQYF 536
EF VV GEKG EAA VTGP G PV+GS YAAD+RR R Y+
Sbjct: 142 EFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR-YRRGYY 182
>BC008801-1|AAH08801.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 101 bits (241), Expect = 4e-21
Identities = 56/102 (54%), Positives = 64/102 (62%)
Frame = +3
Query: 231 QKQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAV 410
+K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG V
Sbjct: 83 EKKVLATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETV 141
Query: 411 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQYF 536
EF VV GEKG EAA VTGP G PV+GS YAAD+RR R Y+
Sbjct: 142 EFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR-YRRGYY 182
>AB209896-1|BAD93133.1| 134|Homo sapiens CSDA protein variant
protein.
Length = 134
Score = 101 bits (241), Expect = 4e-21
Identities = 56/102 (54%), Positives = 64/102 (62%)
Frame = +3
Query: 231 QKQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAV 410
+K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG V
Sbjct: 16 EKKVLATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETV 74
Query: 411 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQYF 536
EF VV GEKG EAA VTGP G PV+GS YAAD+RR R Y+
Sbjct: 75 EFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR-YRRGYY 115
>M85234-1|AAA36569.1| 322|Homo sapiens nuclease sensitive element
binding protein-1 protein.
Length = 322
Score = 100 bits (240), Expect = 6e-21
Identities = 56/100 (56%), Positives = 63/100 (63%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 51 KKVIATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETVE 109
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
F VV GEKG EAA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 110 FDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RNHYRRY 147
>M24070-1|AAA35750.1| 364|Homo sapiens protein ( Human DNA-binding
protein B (dbpB) gene, 3' end. ).
Length = 364
Score = 100 bits (240), Expect = 6e-21
Identities = 56/100 (56%), Positives = 63/100 (63%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 92 KKVIATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETVE 150
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
F VV GEKG EAA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 151 FDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RNHYRRY 188
>L28809-1|AAA20871.1| 324|Homo sapiens protein ( Homo sapiens
dbpB-like protein mRNA, complete cds. ).
Length = 324
Score = 100 bits (240), Expect = 6e-21
Identities = 56/100 (56%), Positives = 63/100 (63%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 52 KKVIATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETVE 110
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
F VV GEKG EAA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 111 FDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RNHYRRY 148
>BC106045-1|AAI06046.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 100 bits (240), Expect = 6e-21
Identities = 56/100 (56%), Positives = 63/100 (63%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 52 KKVIATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETVE 110
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
F VV GEKG EAA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 111 FDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RNHYRRY 148
>BC098435-1|AAH98435.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 100 bits (240), Expect = 6e-21
Identities = 56/100 (56%), Positives = 63/100 (63%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 52 KKVIATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETVE 110
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
F VV GEKG EAA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 111 FDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RNHYRRY 148
>BC090038-1|AAH90038.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 100 bits (240), Expect = 6e-21
Identities = 56/100 (56%), Positives = 63/100 (63%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 52 KKVIATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETVE 110
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
F VV GEKG EAA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 111 FDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RNHYRRY 148
>BC072014-1|AAH72014.1| 266|Homo sapiens YBX1 protein protein.
Length = 266
Score = 100 bits (240), Expect = 6e-21
Identities = 56/100 (56%), Positives = 63/100 (63%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 52 KKVIATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETVE 110
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
F VV GEKG EAA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 111 FDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RNHYRRY 148
>BC071708-1|AAH71708.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 100 bits (240), Expect = 6e-21
Identities = 56/100 (56%), Positives = 63/100 (63%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 52 KKVIATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETVE 110
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
F VV GEKG EAA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 111 FDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RNHYRRY 148
>BC070084-1|AAH70084.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 100 bits (240), Expect = 6e-21
Identities = 56/100 (56%), Positives = 63/100 (63%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 52 KKVIATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETVE 110
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
F VV GEKG EAA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 111 FDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RNHYRRY 148
>BC065571-1|AAH65571.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 100 bits (240), Expect = 6e-21
Identities = 56/100 (56%), Positives = 63/100 (63%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 52 KKVIATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETVE 110
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
F VV GEKG EAA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 111 FDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RNHYRRY 148
>BC038384-1|AAH38384.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 100 bits (240), Expect = 6e-21
Identities = 56/100 (56%), Positives = 63/100 (63%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 52 KKVIATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETVE 110
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
F VV GEKG EAA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 111 FDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RNHYRRY 148
>BC018393-1|AAH18393.1| 267|Homo sapiens Unknown (protein for
IMAGE:3882730) protein.
Length = 267
Score = 100 bits (240), Expect = 6e-21
Identities = 56/100 (56%), Positives = 63/100 (63%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 52 KKVIATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETVE 110
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
F VV GEKG EAA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 111 FDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RNHYRRY 148
>BC015208-1|AAH15208.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 100 bits (240), Expect = 6e-21
Identities = 56/100 (56%), Positives = 63/100 (63%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 52 KKVIATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETVE 110
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
F VV GEKG EAA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 111 FDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RNHYRRY 148
>BC010430-1|AAH10430.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 100 bits (240), Expect = 6e-21
Identities = 56/100 (56%), Positives = 63/100 (63%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 52 KKVIATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETVE 110
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
F VV GEKG EAA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 111 FDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RNHYRRY 148
>BC002411-1|AAH02411.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 100 bits (240), Expect = 6e-21
Identities = 56/100 (56%), Positives = 63/100 (63%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 52 KKVIATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETVE 110
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
F VV GEKG EAA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 111 FDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RNHYRRY 148
>BC000064-1|AAH00064.1| 266|Homo sapiens YBX1 protein protein.
Length = 266
Score = 100 bits (240), Expect = 6e-21
Identities = 56/100 (56%), Positives = 63/100 (63%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 52 KKVIATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETVE 110
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
F VV GEKG EAA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 111 FDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RNHYRRY 148
>J03827-1|AAA61308.1| 317|Homo sapiens NFYA protein.
Length = 317
Score = 100 bits (239), Expect = 8e-21
Identities = 56/100 (56%), Positives = 63/100 (63%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K+V A +V GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 52 KKVIATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSVGDGETVE 110
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
F VV GEKG EAA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 111 FDVVEGEKGEEAANVTGPGGVPVQGSKYAAD--RNHYRRY 148
>BC009744-1|AAH09744.1| 303|Homo sapiens CSDA protein protein.
Length = 303
Score = 99 bits (238), Expect = 1e-20
Identities = 55/102 (53%), Positives = 64/102 (62%)
Frame = +3
Query: 231 QKQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAV 410
+K+V A +V GTV WFNV+ G GFINR TK V K +RS+GDG V
Sbjct: 83 EKKVLATKVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKKNNPRKYLRSLGDGETV 141
Query: 411 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQYF 536
EF VV GEKG EAA VTGP G PV+GS YAAD+RR R Y+
Sbjct: 142 EFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR-YRRGYY 182
>BC047760-1|AAH47760.1| 364|Homo sapiens Y box binding protein 2
protein.
Length = 364
Score = 98.3 bits (234), Expect = 3e-20
Identities = 55/102 (53%), Positives = 62/102 (60%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K V A QV GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 87 KPVLAIQVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKRNNPRKFLRSVGDGETVE 145
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQYFP 539
F VV GEKG EA VTGPGG PVKGS YA ++R+ R++ P
Sbjct: 146 FDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKS--RRFIP 185
>BC033800-1|AAH33800.1| 364|Homo sapiens Y box binding protein 2
protein.
Length = 364
Score = 98.3 bits (234), Expect = 3e-20
Identities = 55/102 (53%), Positives = 62/102 (60%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K V A QV GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 87 KPVLAIQVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKRNNPRKFLRSVGDGETVE 145
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQYFP 539
F VV GEKG EA VTGPGG PVKGS YA ++R+ R++ P
Sbjct: 146 FDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKS--RRFIP 185
>AF096834-1|AAD30662.1| 364|Homo sapiens germ cell specific Y-box
binding protein protein.
Length = 364
Score = 98.3 bits (234), Expect = 3e-20
Identities = 55/102 (53%), Positives = 62/102 (60%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K V A QV GTV WFNV+ G GFINR TK V K +RSVGDG VE
Sbjct: 87 KPVLAIQVLGTVKWFNVRNGYGFINRNDTKED-VFVHQTAIKRNNPRKFLRSVGDGETVE 145
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQYFP 539
F VV GEKG EA VTGPGG PVKGS YA ++R+ R++ P
Sbjct: 146 FDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKS--RRFIP 185
>DQ120685-1|ABB92460.1| 319|Homo sapiens rcNSEP1 protein.
Length = 319
Score = 97.1 bits (231), Expect = 7e-20
Identities = 54/100 (54%), Positives = 63/100 (63%)
Frame = +3
Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
K+V A +V GTV WFNV+ G GFI+R TK V K +RSVGDG VE
Sbjct: 48 KKVIATKVLGTVKWFNVRNGYGFIHRNDTKED-VFVHHTAXKKNNPRKYLRSVGDGEXVE 106
Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQY 533
F VV GEKG +AA VTGPGG PV+GS YAAD R +R+Y
Sbjct: 107 FDVVEGEKGAKAANVTGPGGVPVQGSKYAAD--RNHYRRY 144
>AB208818-1|BAD92055.1| 268|Homo sapiens germ cell specific Y-box
binding protein variant protein.
Length = 268
Score = 69.3 bits (162), Expect = 2e-11
Identities = 34/55 (61%), Positives = 40/55 (72%)
Frame = +3
Query: 375 KAVRSVGDGXAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGXHRQYFP 539
K +RSVGDG VEF VV GEKG EA VTGPGG PVKGS YA ++R+ R++ P
Sbjct: 37 KFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKS--RRFIP 89
>Z95329-1|CAI21661.2| 250|Homo sapiens lin-28 homolog B (C.
elegans) protein.
Length = 250
Score = 50.4 bits (115), Expect = 8e-06
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +3
Query: 258 SGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTH-----VKAVRSVGDGXAVEFAV 422
+G WFNV+ G GFI+ + + +P V H ++ RS+ +G VEF
Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPL---DIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 87
Query: 423 VAGEKGFEAAGVTGPGGEPVKGS 491
KG E+ VTGPGG P GS
Sbjct: 88 KKSSKGLESIRVTGPGGSPCLGS 110
>DQ127228-1|AAZ38897.1| 250|Homo sapiens LIN28B protein.
Length = 250
Score = 50.4 bits (115), Expect = 8e-06
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +3
Query: 258 SGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTH-----VKAVRSVGDGXAVEFAV 422
+G WFNV+ G GFI+ + + +P V H ++ RS+ +G VEF
Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPL---DIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 87
Query: 423 VAGEKGFEAAGVTGPGGEPVKGS 491
KG E+ VTGPGG P GS
Sbjct: 88 KKSSKGLESIRVTGPGGSPCLGS 110
>BC150538-1|AAI50539.1| 227|Homo sapiens Unknown (protein for
IMAGE:40127315) protein.
Length = 227
Score = 50.4 bits (115), Expect = 8e-06
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +3
Query: 258 SGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTH-----VKAVRSVGDGXAVEFAV 422
+G WFNV+ G GFI+ + + +P V H ++ RS+ +G VEF
Sbjct: 8 TGHCKWFNVRMGFGFISMINREGSPL---DIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 64
Query: 423 VAGEKGFEAAGVTGPGGEPVKGS 491
KG E+ VTGPGG P GS
Sbjct: 65 KKSSKGLESIRVTGPGGSPCLGS 87
>BC150537-1|AAI50538.1| 227|Homo sapiens Unknown (protein for
IMAGE:40127314) protein.
Length = 227
Score = 50.4 bits (115), Expect = 8e-06
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +3
Query: 258 SGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTH-----VKAVRSVGDGXAVEFAV 422
+G WFNV+ G GFI+ + + +P V H ++ RS+ +G VEF
Sbjct: 8 TGHCKWFNVRMGFGFISMINREGSPL---DIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 64
Query: 423 VAGEKGFEAAGVTGPGGEPVKGS 491
KG E+ VTGPGG P GS
Sbjct: 65 KKSSKGLESIRVTGPGGSPCLGS 87
>BC141960-1|AAI41961.1| 227|Homo sapiens LIN28B protein protein.
Length = 227
Score = 50.4 bits (115), Expect = 8e-06
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +3
Query: 258 SGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTH-----VKAVRSVGDGXAVEFAV 422
+G WFNV+ G GFI+ + + +P V H ++ RS+ +G VEF
Sbjct: 8 TGHCKWFNVRMGFGFISMINREGSPL---DIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 64
Query: 423 VAGEKGFEAAGVTGPGGEPVKGS 491
KG E+ VTGPGG P GS
Sbjct: 65 KKSSKGLESIRVTGPGGSPCLGS 87
>BC127713-1|AAI27714.1| 227|Homo sapiens LIN28B protein protein.
Length = 227
Score = 50.4 bits (115), Expect = 8e-06
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +3
Query: 258 SGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTH-----VKAVRSVGDGXAVEFAV 422
+G WFNV+ G GFI+ + + +P V H ++ RS+ +G VEF
Sbjct: 8 TGHCKWFNVRMGFGFISMINREGSPL---DIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 64
Query: 423 VAGEKGFEAAGVTGPGGEPVKGS 491
KG E+ VTGPGG P GS
Sbjct: 65 KKSSKGLESIRVTGPGGSPCLGS 87
>BC127712-1|AAI27713.1| 227|Homo sapiens LIN28B protein protein.
Length = 227
Score = 50.4 bits (115), Expect = 8e-06
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +3
Query: 258 SGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTH-----VKAVRSVGDGXAVEFAV 422
+G WFNV+ G GFI+ + + +P V H ++ RS+ +G VEF
Sbjct: 8 TGHCKWFNVRMGFGFISMINREGSPL---DIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 64
Query: 423 VAGEKGFEAAGVTGPGGEPVKGS 491
KG E+ VTGPGG P GS
Sbjct: 65 KKSSKGLESIRVTGPGGSPCLGS 87
>AL135911-2|CAI20969.2| 250|Homo sapiens lin-28 homolog B (C.
elegans) protein.
Length = 250
Score = 50.4 bits (115), Expect = 8e-06
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +3
Query: 258 SGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTH-----VKAVRSVGDGXAVEFAV 422
+G WFNV+ G GFI+ + + +P V H ++ RS+ +G VEF
Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPL---DIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 87
Query: 423 VAGEKGFEAAGVTGPGGEPVKGS 491
KG E+ VTGPGG P GS
Sbjct: 88 KKSSKGLESIRVTGPGGSPCLGS 110
>AK131411-1|BAD18558.1| 250|Homo sapiens protein ( Homo sapiens
cDNA FLJ16517 fis, clone NT2RI3007167. ).
Length = 250
Score = 50.4 bits (115), Expect = 8e-06
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +3
Query: 258 SGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTH-----VKAVRSVGDGXAVEFAV 422
+G WFNV+ G GFI+ + + +P V H ++ RS+ +G VEF
Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPL---DIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 87
Query: 423 VAGEKGFEAAGVTGPGGEPVKGS 491
KG E+ VTGPGG P GS
Sbjct: 88 KKSSKGLESIRVTGPGGSPCLGS 110
>BC028566-1|AAH28566.1| 209|Homo sapiens LIN28 protein protein.
Length = 209
Score = 47.2 bits (107), Expect = 8e-05
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 258 SGTVXWFNVKRGXGFINRXXTKXXCVC--ASXLPSPVTTHVKAVRSVGDGXAVEFAVVAG 431
+G WFNV+ G GF++ + H++ RS+ +G AVEF
Sbjct: 41 AGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKS 100
Query: 432 EKGFEAAGVTGPGG 473
KG E+ VTGPGG
Sbjct: 101 AKGLESIRVTGPGG 114
>AL513365-12|CAI21500.1| 209|Homo sapiens lin-28 homolog (C.
elegans) protein.
Length = 209
Score = 47.2 bits (107), Expect = 8e-05
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 258 SGTVXWFNVKRGXGFINRXXTKXXCVC--ASXLPSPVTTHVKAVRSVGDGXAVEFAVVAG 431
+G WFNV+ G GF++ + H++ RS+ +G AVEF
Sbjct: 41 AGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKS 100
Query: 432 EKGFEAAGVTGPGG 473
KG E+ VTGPGG
Sbjct: 101 AKGLESIRVTGPGG 114
>AK022519-1|BAB14075.1| 209|Homo sapiens protein ( Homo sapiens
cDNA FLJ12457 fis, clone NT2RM1000666, weakly similar to
DNA-BINDING PROTEIN A. ).
Length = 209
Score = 47.2 bits (107), Expect = 8e-05
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 258 SGTVXWFNVKRGXGFINRXXTKXXCVC--ASXLPSPVTTHVKAVRSVGDGXAVEFAVVAG 431
+G WFNV+ G GF++ + H++ RS+ +G AVEF
Sbjct: 41 AGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKS 100
Query: 432 EKGFEAAGVTGPGG 473
KG E+ VTGPGG
Sbjct: 101 AKGLESIRVTGPGG 114
>AF521099-1|AAM77751.1| 209|Homo sapiens RNA-binding protein LIN-28
protein.
Length = 209
Score = 47.2 bits (107), Expect = 8e-05
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 258 SGTVXWFNVKRGXGFINRXXTKXXCVC--ASXLPSPVTTHVKAVRSVGDGXAVEFAVVAG 431
+G WFNV+ G GF++ + H++ RS+ +G AVEF
Sbjct: 41 AGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKS 100
Query: 432 EKGFEAAGVTGPGG 473
KG E+ VTGPGG
Sbjct: 101 AKGLESIRVTGPGG 114
>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
protein.
Length = 1464
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 429 GEKGFEAAGVTGPGGEPVKGSPYAADKRRG 518
GE+GF G+ GP GEP K P A RG
Sbjct: 968 GERGFP--GLPGPSGEPGKQGPSGASGERG 995
>X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1
protein.
Length = 1069
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 429 GEKGFEAAGVTGPGGEPVKGSPYAADKRRG 518
GE+GF G+ GP GEP K P A RG
Sbjct: 968 GERGFP--GLPGPSGEPGKQGPSGASGERG 995
>K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein.
Length = 1040
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 429 GEKGFEAAGVTGPGGEPVKGSPYAADKRRG 518
GE+GF G+ GP GEP K P A RG
Sbjct: 544 GERGFP--GLPGPSGEPGKQGPSGASGERG 571
>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
protein.
Length = 1464
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 429 GEKGFEAAGVTGPGGEPVKGSPYAADKRRG 518
GE+GF G+ GP GEP K P A RG
Sbjct: 968 GERGFP--GLPGPSGEPGKQGPSGASGERG 995
>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
protein.
Length = 1461
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 429 GEKGFEAAGVTGPGGEPVKGSPYAADKRRG 518
GE+GF G+ GP GEP K P A RG
Sbjct: 965 GERGFP--GLPGPSGEPGKQGPSGASGERG 992
>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
precursor variant protein.
Length = 1467
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 429 GEKGFEAAGVTGPGGEPVKGSPYAADKRRG 518
GE+GF G+ GP GEP K P A RG
Sbjct: 971 GERGFP--GLPGPSGEPGKQGPSGASGERG 998
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,238,069
Number of Sequences: 237096
Number of extensions: 986946
Number of successful extensions: 2774
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 2453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2727
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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