Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_C19
         (861 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061440-1|AAL28988.1|  352|Drosophila melanogaster LD37574p pro...   107   2e-23
AE014296-2093|AAF49961.3|  352|Drosophila melanogaster CG5654-PA...   107   2e-23
U49120-1|AAB94634.1|  359|Drosophila melanogaster Y-box protein ...   107   3e-23
AY118360-1|AAM48389.1|  195|Drosophila melanogaster RE05342p pro...    33   0.38 
AF521096-1|AAM77748.1|  195|Drosophila melanogaster RNA-binding ...    33   0.38 
AE014296-983|AAF50758.2|  195|Drosophila melanogaster CG17334-PA...    33   0.38 
AE013599-1127|AAO41426.1|  970|Drosophila melanogaster CG12052-P...    29   8.2  
AB107342-1|BAC67647.1|  970|Drosophila melanogaster Lola protein...    29   8.2  
AB107322-1|BAC67627.1|  970|Drosophila melanogaster Lola protein...    29   8.2  
AB107302-1|BAC67607.1|  970|Drosophila melanogaster Lola protein...    29   8.2  
AB107282-1|BAC67587.1|  970|Drosophila melanogaster Lola protein...    29   8.2  

>AY061440-1|AAL28988.1|  352|Drosophila melanogaster LD37574p
           protein.
          Length = 352

 Score =  107 bits (257), Expect = 2e-23
 Identities = 57/94 (60%), Positives = 63/94 (67%)
 Frame = +3

Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
           K+V A +V+GTV WFNVK G GFINR  T+   V             KAVRSVGDG  VE
Sbjct: 55  KEVIATKVTGTVKWFNVKSGYGFINRNDTRED-VFVHQSAIARNNPKKAVRSVGDGEVVE 113

Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 515
           F VV GEKG EAA VTGP GEPV+GS +AADKRR
Sbjct: 114 FDVVIGEKGNEAANVTGPSGEPVRGSQFAADKRR 147


>AE014296-2093|AAF49961.3|  352|Drosophila melanogaster CG5654-PA
           protein.
          Length = 352

 Score =  107 bits (257), Expect = 2e-23
 Identities = 57/94 (60%), Positives = 63/94 (67%)
 Frame = +3

Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
           K+V A +V+GTV WFNVK G GFINR  T+   V             KAVRSVGDG  VE
Sbjct: 55  KEVIATKVTGTVKWFNVKSGYGFINRNDTRED-VFVHQSAIARNNPKKAVRSVGDGEVVE 113

Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 515
           F VV GEKG EAA VTGP GEPV+GS +AADKRR
Sbjct: 114 FDVVIGEKGNEAANVTGPSGEPVRGSQFAADKRR 147


>U49120-1|AAB94634.1|  359|Drosophila melanogaster Y-box protein
           protein.
          Length = 359

 Score =  107 bits (256), Expect = 3e-23
 Identities = 56/94 (59%), Positives = 63/94 (67%)
 Frame = +3

Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
           K+V A +V+GTV WFNVK G GFINR  T+          +      KAVRSVGDG  VE
Sbjct: 56  KEVIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQS--AIANNPKKAVRSVGDGEVVE 113

Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 515
           F VV GEKG EAA VTGP GEPV+GS +AADKRR
Sbjct: 114 FDVVIGEKGNEAANVTGPSGEPVRGSQFAADKRR 147


>AY118360-1|AAM48389.1|  195|Drosophila melanogaster RE05342p
           protein.
          Length = 195

 Score = 33.5 bits (73), Expect = 0.38
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 261 GTVXWFNVKRGXGFIN-RXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVEFAVVAGEK 437
           G   WFNV +G GF+      +   V  S +       +   RS+G+   VEF      +
Sbjct: 41  GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVI------QMSGFRSLGEQEEVEFECQRTSR 94

Query: 438 GFEAAGVTGPGGEPVKGSPY 497
           G EA  V+   G   +GS Y
Sbjct: 95  GLEATRVSSRHGGSCQGSTY 114


>AF521096-1|AAM77748.1|  195|Drosophila melanogaster RNA-binding
           protein LIN-28 protein.
          Length = 195

 Score = 33.5 bits (73), Expect = 0.38
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 261 GTVXWFNVKRGXGFIN-RXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVEFAVVAGEK 437
           G   WFNV +G GF+      +   V  S +       +   RS+G+   VEF      +
Sbjct: 41  GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVI------QMSGFRSLGEQEEVEFECQRTSR 94

Query: 438 GFEAAGVTGPGGEPVKGSPY 497
           G EA  V+   G   +GS Y
Sbjct: 95  GLEATRVSSRHGGSCQGSTY 114


>AE014296-983|AAF50758.2|  195|Drosophila melanogaster CG17334-PA
           protein.
          Length = 195

 Score = 33.5 bits (73), Expect = 0.38
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 261 GTVXWFNVKRGXGFIN-RXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVEFAVVAGEK 437
           G   WFNV +G GF+      +   V  S +       +   RS+G+   VEF      +
Sbjct: 41  GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVI------QMSGFRSLGEQEEVEFECQRTSR 94

Query: 438 GFEAAGVTGPGGEPVKGSPY 497
           G EA  V+   G   +GS Y
Sbjct: 95  GLEATRVSSRHGGSCQGSTY 114


>AE013599-1127|AAO41426.1|  970|Drosophila melanogaster CG12052-PI,
           isoform I protein.
          Length = 970

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 369 HVKAVRSVGDGXAVEFAVVAGEKGFEAAGVTGPGGEP 479
           HVK + ++      E   VA ++G  A  VTGP G+P
Sbjct: 495 HVKKLGNITAAKLEENQAVAQQQGQAAVTVTGPAGQP 531


>AB107342-1|BAC67647.1|  970|Drosophila melanogaster Lola protein
           isoform K protein.
          Length = 970

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 369 HVKAVRSVGDGXAVEFAVVAGEKGFEAAGVTGPGGEP 479
           HVK + ++      E   VA ++G  A  VTGP G+P
Sbjct: 495 HVKKLGNITAAKLEENQAVAQQQGQAAVTVTGPAGQP 531


>AB107322-1|BAC67627.1|  970|Drosophila melanogaster Lola protein
           isoform K protein.
          Length = 970

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 369 HVKAVRSVGDGXAVEFAVVAGEKGFEAAGVTGPGGEP 479
           HVK + ++      E   VA ++G  A  VTGP G+P
Sbjct: 495 HVKKLGNITAAKLEENQAVAQQQGQAAVTVTGPAGQP 531


>AB107302-1|BAC67607.1|  970|Drosophila melanogaster Lola protein
           isoform K protein.
          Length = 970

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 369 HVKAVRSVGDGXAVEFAVVAGEKGFEAAGVTGPGGEP 479
           HVK + ++      E   VA ++G  A  VTGP G+P
Sbjct: 495 HVKKLGNITAAKLEENQAVAQQQGQAAVTVTGPAGQP 531


>AB107282-1|BAC67587.1|  970|Drosophila melanogaster Lola protein
           isoform K protein.
          Length = 970

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 369 HVKAVRSVGDGXAVEFAVVAGEKGFEAAGVTGPGGEP 479
           HVK + ++      E   VA ++G  A  VTGP G+P
Sbjct: 495 HVKKLGNITAAKLEENQAVAQQQGQAAVTVTGPAGQP 531


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,110,993
Number of Sequences: 53049
Number of extensions: 261005
Number of successful extensions: 824
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4147514904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)