Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_C19
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical pr...    85   5e-17
U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box...    56   4e-08
U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box...    54   2e-07
Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical pr...    50   2e-06
AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical ...    50   2e-06
Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical pr...    31   0.80 
Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.       31   1.1  
U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.       31   1.1  
L11247-3|AAA28008.1|  278|Caenorhabditis elegans Collagen protei...    30   2.4  

>Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical
           protein F33A8.3 protein.
          Length = 208

 Score = 85.4 bits (202), Expect = 5e-17
 Identities = 46/92 (50%), Positives = 53/92 (57%)
 Frame = +3

Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXAVE 413
           K V A +V GTV WFNVK G GFINR  T    +             K +RS+GD   V 
Sbjct: 14  KPVKATKVKGTVKWFNVKNGYGFINRTDTNED-IFVHQTAIINNNPNKYLRSLGDNEEVM 72

Query: 414 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 509
           F +V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 73  FDIVEGSKGLEAASVTGPDGGPVQGSKYAADR 104


>U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box
           protein 2 protein.
          Length = 267

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 32/90 (35%), Positives = 44/90 (48%)
 Frame = +3

Query: 228 KQKQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXA 407
           K K      + G V W++V R  GFI+R   +          +   T    +R++GD   
Sbjct: 57  KSKTAITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEE 116

Query: 408 VEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 497
           V F +V G+ G EAA VTGP G+ V GS Y
Sbjct: 117 VLFDLVEGKNGPEAANVTGPNGDNVIGSRY 146


>U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box
           protein 3 protein.
          Length = 265

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 33/90 (36%), Positives = 43/90 (47%)
 Frame = +3

Query: 228 KQKQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVTTHVKAVRSVGDGXA 407
           K K V    + G V W++V R  GFI+R   +          S   T    +R++ D   
Sbjct: 55  KAKIVLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEE 114

Query: 408 VEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 497
           V F +V G+ G EAA VTGP G  V GS Y
Sbjct: 115 VLFDLVDGKNGPEAANVTGPAGVNVSGSKY 144


>Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
 Frame = +3

Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVT--THVKA-VRSVGDGX 404
           K+V    V G V WF+V+   GF+ R              + +T  + +K  +R++ D  
Sbjct: 82  KKVIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDE 141

Query: 405 AVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 500
            V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 142 PVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173


>AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
 Frame = +3

Query: 234 KQVXAEQVSGTVXWFNVKRGXGFINRXXTKXXCVCASXLPSPVT--THVKA-VRSVGDGX 404
           K+V    V G V WF+V+   GF+ R              + +T  + +K  +R++ D  
Sbjct: 82  KKVIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDE 141

Query: 405 AVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 500
            V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 142 PVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173


>Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical
           protein F02E9.2b protein.
          Length = 196

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
 Frame = +3

Query: 225 VKQKQVXAEQVSGTVXWFNVKRGXGFINRXXT-KXXCVCASXLPSPVTTHVKAVRSVGDG 401
           +K +     +  G+  WFNV +G GF+    T +   V  S L      +++  RS+ +G
Sbjct: 12  IKSQLSPTPRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNL------NMQGFRSLDEG 65

Query: 402 XAVEFAVV--AGEKGFEAAGVTGP-GGEPVKGS 491
             V + +   +  KG EA  V+G   G+ +KGS
Sbjct: 66  ERVSYYIQERSNGKGREAYAVSGEVEGQGLKGS 98


>Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical
           protein F02E9.2a protein.
          Length = 227

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
 Frame = +3

Query: 261 GTVXWFNVKRGXGFINRXXT-KXXCVCASXLPSPVTTHVKAVRSVGDGXAVEFAVV--AG 431
           G+  WFNV +G GF+    T +   V  S L      +++  RS+ +G  V + +   + 
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQSNL------NMQGFRSLDEGERVSYYIQERSN 108

Query: 432 EKGFEAAGVTGP-GGEPVKGS 491
            KG EA  V+G   G+ +KGS
Sbjct: 109 GKGREAYAVSGEVEGQGLKGS 129


>U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.
          Length = 227

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
 Frame = +3

Query: 261 GTVXWFNVKRGXGFINRXXT-KXXCVCASXLPSPVTTHVKAVRSVGDGXAVEFAVV--AG 431
           G+  WFNV +G GF+    T +   V  S L      +++  RS+ +G  V + +   + 
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQSNL------NMQGFRSLDEGERVSYYIQERSN 108

Query: 432 EKGFEAAGVTGP-GGEPVKGS 491
            KG EA  V+G   G+ +KGS
Sbjct: 109 GKGREAYAVSGEVEGQGLKGS 129


>U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.
          Length = 227

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
 Frame = +3

Query: 261 GTVXWFNVKRGXGFINRXXT-KXXCVCASXLPSPVTTHVKAVRSVGDGXAVEFAVV--AG 431
           G+  WFNV +G GF+    T +   V  S L      +++  RS+ +G  V + +   + 
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQSNL------NMQGFRSLDEGERVSYYIQERSN 108

Query: 432 EKGFEAAGVTGP-GGEPVKGS 491
            KG EA  V+G   G+ +KGS
Sbjct: 109 GKGREAYAVSGEVEGQGLKGS 129


>L11247-3|AAA28008.1|  278|Caenorhabditis elegans Collagen protein
           91 protein.
          Length = 278

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 396 DGXAVEFAVVAGEKGFEA-AGVTGPGGEPVKGSPYAADKRRGXHRQ 530
           DG A++FA  AG    +  AG  GP G P    P   D + G   Q
Sbjct: 117 DGVAIQFASAAGGACIQCPAGEAGPAGAPGAPGPAGPDGQPGADGQ 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,859,338
Number of Sequences: 27780
Number of extensions: 131761
Number of successful extensions: 436
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)