Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_C18
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624...    30   2.1  
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973...    29   4.9  

>03_02_0186 -
           6243487-6243799,6243892-6244400,6244495-6244557,
           6245482-6245681,6246125-6246519,6246776-6246888
          Length = 530

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +1

Query: 451 CLFCACASXSRSXLVCLLHRCYPAP 525
           CLFC     SR  LVC L RC  AP
Sbjct: 58  CLFCEANFISRRILVCDLLRCLVAP 82


>03_02_0599 -
           9730204-9730314,9730766-9731549,9731631-9732051,
           9732139-9732385,9733730-9733921,9734071-9734204,
           9734316-9734477,9736162-9736200,9737507-9737825
          Length = 802

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 608 NFXQHXHXHKHFRVYFIRXQEQRNRGNQGAG*QRCRRHTRXDLDXXAHAQN 456
           +F QH H H H+ V+ +  Q+Q+    +G+   +C      D     HA N
Sbjct: 633 SFMQHHH-HVHYYVHVMTQQQQQPSIERGSSDAQCGSSNVFDPPIEGHAAN 682


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,126,555
Number of Sequences: 37544
Number of extensions: 98788
Number of successful extensions: 114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)