Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_C15
(847 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 150 3e-37
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 47 4e-06
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 36 0.005
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 36 0.007
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 35 0.013
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 35 0.017
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 34 0.022
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 33 0.067
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 33 0.067
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 31 0.27
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 31 0.27
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 31 0.27
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 30 0.36
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 30 0.47
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 30 0.47
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.63
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 29 0.83
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 29 0.83
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 29 1.1
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 28 1.4
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 28 1.9
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 28 1.9
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 2.5
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 27 3.3
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 27 3.3
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 3.3
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 26 5.8
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|... 26 5.8
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 26 5.8
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 7.7
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 26 7.7
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 26 7.7
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 26 7.7
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 150 bits (363), Expect = 3e-37
Identities = 61/97 (62%), Positives = 79/97 (81%)
Frame = +3
Query: 531 RINRAATCVKWSPMENXFAVGSGARLISICYFEKENXWWVSKHIKKPIRSTVXSIDWHPX 710
R+NRAAT V+WSP E+ FAVGSGAR+IS+CYFE+EN WWVSKH+K+P+RST+ S+DWHP
Sbjct: 98 RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN 157
Query: 711 NILLVAGSADFXVRVFSXYIKDIEXQPGPNVWGSXLP 821
N+LL AG AD V S Y++D++ +P +VWGS LP
Sbjct: 158 NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLP 194
Score = 89.0 bits (211), Expect = 7e-19
Identities = 36/78 (46%), Positives = 50/78 (64%)
Frame = +2
Query: 287 HAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVD 466
HA+N R++ + N+V +Y+++GN WK +HD V +DWAP +NRIVTCS D
Sbjct: 17 HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD 76
Query: 467 RNAYVWTQGDDGKWATTL 520
RNAYV+ + DG W TL
Sbjct: 77 RNAYVYEKRPDGTWKQTL 94
Score = 33.9 bits (74), Expect = 0.029
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 TFGXSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGN-DWKQTNNLVEHDLRVMGIDWA 430
TF +TC W ++I + ++Y+K + WKQT L+ + + W+
Sbjct: 50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS 109
Query: 431 PNTNRIVTCSVDRNAYVWTQGDDGKW 508
PN ++ S R V + W
Sbjct: 110 PNEDKFAVGSGARVISVCYFEQENDW 135
Score = 33.5 bits (73), Expect = 0.039
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +2
Query: 293 WNKDRSQIAFSPNNNEVHI-YKKEGNDWKQTNNLVEHDLR--VMGIDWAPNTNRIVTCSV 463
W+ + + A + + Y ++ NDW + +L + LR ++ +DW PN +
Sbjct: 108 WSPNEDKFAVGSGARVISVCYFEQENDWWVSKHL-KRPLRSTILSLDWHPNNVLLAAGCA 166
Query: 464 DRNAYV 481
DR AYV
Sbjct: 167 DRKAYV 172
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/66 (21%), Positives = 24/66 (36%)
Frame = +3
Query: 537 NRAATCVKWSPMENXFAVGSGARLISICYFEKENXWWVSKHIKKPIRSTVXSIDWHPXNI 716
++ TCV W+P N S R + Y ++ + W + + + W P
Sbjct: 55 DKIVTCVDWAPKSNRIVTCSQDRNAYV-YEKRPDGTWKQTLVLLRLNRAATFVRWSPNED 113
Query: 717 LLVAGS 734
GS
Sbjct: 114 KFAVGS 119
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 46.8 bits (106), Expect = 4e-06
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +2
Query: 290 AWNK-DRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVD 466
AW +R +A + ++ V I +K +DW+ T L H+ V I W+ N N + TCS D
Sbjct: 340 AWRPIERPVLAVASFDSVVSINEKIDDDWECTAALEGHENEVKCIAWSCNGNYLATCSRD 399
Query: 467 RNAYVWTQGDDGKW 508
++ ++W +D ++
Sbjct: 400 KSVWIWEATEDDEF 413
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/79 (21%), Positives = 36/79 (45%)
Frame = +2
Query: 293 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRN 472
W+ + +N + ++ +G+DW T L H V + ++PN N + + D N
Sbjct: 431 WHPTEDLLVSGSYDNSICFWRDDGDDWALTCQLQGHTNTVWALAFSPNGNTLASADNDGN 490
Query: 473 AYVWTQGDDGKWATTLGSS 529
++W + + T+ S+
Sbjct: 491 VFLWIKISSNEDVATIDST 509
Score = 35.1 bits (77), Expect = 0.013
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +2
Query: 278 ITCHAWNKDRSQIAFSPNNNEVHIYKK-EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVT 454
+ C AW+ + + +A + V I++ E +++ L EH V + W P + +V+
Sbjct: 381 VKCIAWSCNGNYLATCSRDKSVWIWEATEDDEFDCLAVLQEHTQDVKVVTWHPTEDLLVS 440
Query: 455 CSVDRNAYVW-TQGDDGKWATT 517
S D + W GDD WA T
Sbjct: 441 GSYDNSICFWRDDGDD--WALT 460
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 552 CVKWSPMENXFAVGSGARLISICYFEKENXWWVSKHIKKPIRSTVXSIDWHPXNILLVAG 731
C+ WS N A S + + I +++ + +++ + V + WHP LLV+G
Sbjct: 383 CIAWSCNGNYLATCSRDKSVWIWEATEDDEFDCLAVLQEHTQD-VKVVTWHPTEDLLVSG 441
Query: 732 SAD 740
S D
Sbjct: 442 SYD 444
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 36.3 bits (80), Expect = 0.005
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +2
Query: 365 NDWKQTNNLVEHDLRVMGIDWAPNTNR----IVTCSVDRNAYVWTQGDDGKWATT 517
N+W + L H + WAP+ + + S D+N ++WT+ DG W T
Sbjct: 193 NNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIWTKEGDGPWQKT 247
Score = 30.7 bits (66), Expect = 0.27
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +2
Query: 314 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNT-NRIVTC-SVDRNAYVWT 487
+A + + V ++++ G W + + H V + WAP+ ++ C S D V
Sbjct: 70 LASASYDGHVIVWRETGGVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVSVLE 129
Query: 488 QGDDGKWATTLGSSAYQP 541
DDG T + +A++P
Sbjct: 130 FKDDGSCDTRI-FTAHEP 146
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 290 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNL 391
+W+ + +A S +N+V+++K+ N W+ N L
Sbjct: 262 SWSLSGNILAVSCGDNKVYLFKESQNKWQLLNEL 295
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 35.9 bits (79), Expect = 0.007
Identities = 26/74 (35%), Positives = 36/74 (48%)
Frame = +3
Query: 540 RAATCVKWSPMENXFAVGSGARLISICYFEKENXWWVSKHIKKPIRSTVXSIDWHPXNIL 719
R + VKW+ A S + I I FEK S K + V SID++P L
Sbjct: 97 RGISQVKWATGSKYLASASDDKTIRIWDFEKR----CSVRCLKGHTNYVSSIDFNPLGTL 152
Query: 720 LVAGSADFXVRVFS 761
LV+GS D VR+++
Sbjct: 153 LVSGSWDETVRIWN 166
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 35.1 bits (77), Expect = 0.013
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Frame = +2
Query: 254 TFGXSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWK----------QTNNLVEHD 403
T + + + C A++ D S A ++ +H+Y N + Q ++L+ H
Sbjct: 344 TMHNTLSAVNCAAFSDDASMFALGCADSSIHLYSSTNNGPQPLVGSQNEPLQKSSLIGHT 403
Query: 404 LRVMGIDWAPNTNRIVTCSVDRNAYVWTQ 490
V G+ +P I++CS D +W++
Sbjct: 404 RPVFGVSISPQKEFILSCSEDGFTRLWSK 432
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 34.7 bits (76), Expect = 0.017
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +2
Query: 314 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 484
+A S +N V +Y + K NL H L V+ +D + ++ +VTCS D+N +W
Sbjct: 549 VAASLLDNTVKVYYLDS--LKFFLNLYGHKLPVLSMDISYDSKLLVTCSADKNVKIW 603
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 386 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 484
++ H +M + + P+T TCS DR W
Sbjct: 613 SIFAHQDSIMEVTFQPDTYNFFTCSKDREVRYW 645
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 34.3 bits (75), Expect = 0.022
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = +2
Query: 260 GXSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNT 439
G A C AW+ D + S + + ++ K +L H+ +V +DW+P+
Sbjct: 429 GHVAAVYQC-AWSTDSRLLVSSSQDTTLKVWDVRSK--KMKFDLPGHEDQVFAVDWSPDG 485
Query: 440 NRIVTCSVDRNAYVWT 487
R+ + D+ +W+
Sbjct: 486 QRVASGGADKAVRIWS 501
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 684 VXSIDWHPXNILLVAGSADFXVRVFS 761
V ++DW P + +G AD VR++S
Sbjct: 476 VFAVDWSPDGQRVASGGADKAVRIWS 501
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 32.7 bits (71), Expect = 0.067
Identities = 16/65 (24%), Positives = 35/65 (53%)
Frame = +2
Query: 290 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 469
A++ +A S +++V IY+ + L EH V+ ++W+ + ++ + SVD+
Sbjct: 37 AFSPQAEYLAASSWDSKVRIYEVQATGQSIGKALYEHQGPVLSVNWSRDGTKVASGSVDK 96
Query: 470 NAYVW 484
+A V+
Sbjct: 97 SAKVF 101
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 32.7 bits (71), Expect = 0.067
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 389 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATT 517
L+ H+ VM +DW P I++ S D + VW + G W T
Sbjct: 264 LMGHEDWVMSVDWHPTKEMILSSSADSSMIVWEPDTNTGIWVVT 307
Score = 29.1 bits (62), Expect = 0.83
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +2
Query: 293 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRN 472
WN + + + ++K++ W Q ++ H V G+ W P ++ D+
Sbjct: 334 WNPNGNCVVCWGRTGGWRLWKQDAGQWLQLPSISGHTKSVKGVAWDPEGKFYLSAGTDQT 393
Query: 473 AYVWTQ-GDDGKW 508
++ + D W
Sbjct: 394 TRLFARFKKDNAW 406
Score = 27.5 bits (58), Expect = 2.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 684 VXSIDWHPXNILLVAGSAD 740
V S+DWHP ++++ SAD
Sbjct: 271 VMSVDWHPTKEMILSSSAD 289
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +2
Query: 323 SPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 499
+P + + +Y E W Q L H L V I ++P+ I++ DR + Q ++
Sbjct: 554 TPEHAVIRLY--ETQSWNQQQVLKGHSLTVTTIKFSPDDRYILSAGRDRLVCLHEQAEN 610
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 30.7 bits (66), Expect = 0.27
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 395 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 499
EH+L +G+ W+ N+ + S D+N YVW+ D
Sbjct: 269 EHNL--LGVAWSRNSRFVGAGSSDKNVYVWSATGD 301
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 30.7 bits (66), Expect = 0.27
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +2
Query: 290 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAP-NTNRIVT--CS 460
AW D Q+A N+N V I+ + K T H+ V + W P +N + T +
Sbjct: 311 AWRSDGLQLASGGNDNVVQIWDARSSIPKFTK--TNHNAAVKAVAWCPWQSNLLATGGGT 368
Query: 461 VDRNAYVW 484
+D+ + W
Sbjct: 369 MDKQIHFW 376
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 30.7 bits (66), Expect = 0.27
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 278 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 457
+ C W+ D + V ++ N+ K H++ V + ++PN ++ VT
Sbjct: 126 VRCAEWSTDGRWLISGDGGGMVKYFEPNLNNVKIVQ---AHEMEVRDVAFSPNDSKFVTA 182
Query: 458 SVDRNAYVW 484
S D + VW
Sbjct: 183 SDDGSLKVW 191
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 684 VXSIDWHPXNILLVAGSADFXVR 752
V ++DWHP LL +GS D V+
Sbjct: 209 VKTVDWHPSKGLLASGSKDNLVK 231
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 30.3 bits (65), Expect = 0.36
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +2
Query: 353 KKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 484
+K +W+ L+ HD + + W+ ++ +V+ +D + VW
Sbjct: 118 EKHTENWRSYRRLLGHDNDIQDLCWSYDSQLVVSVGLDSSIIVW 161
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 29.9 bits (64), Expect = 0.47
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 293 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAP 433
WN D SQ A N+N V ++K G+D +Q + + + V + + P
Sbjct: 330 WNHDGSQFASGGNDNRVCLFK--GSDLRQPLYVWQQNAAVKALSFCP 374
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 29.9 bits (64), Expect = 0.47
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +2
Query: 347 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 484
+Y +G Q + H + I W+P++++ VT S + +W
Sbjct: 213 VYVFDGKTGDQVYEIDAHKGSIFSISWSPDSSQFVTSSAGYSCKIW 258
Score = 29.5 bits (63), Expect = 0.63
Identities = 16/69 (23%), Positives = 27/69 (39%)
Frame = +2
Query: 272 APITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIV 451
AP T ++ +A N V I+ G D N + R+ +DW ++ RI+
Sbjct: 59 APTTVARFSPSGYYVASGDNQGNVRIWDCAGEDKILKNQVTAISGRITDLDWDGDSQRII 118
Query: 452 TCSVDRNAY 478
+ Y
Sbjct: 119 AVGEGKERY 127
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/66 (22%), Positives = 28/66 (42%)
Frame = +2
Query: 290 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 469
+WN + +A + + +HIY E K H L ++W + N +++ D
Sbjct: 529 SWNAKSTHLATASLDTNIHIYSVE-RPMKYIAMKNAHSLGATQVEWV-SENELLSTGSDA 586
Query: 470 NAYVWT 487
VW+
Sbjct: 587 AIKVWS 592
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.63
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 374 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 484
K+ L+ H V I W+P+ +++CS D++ +W
Sbjct: 246 KRVFRLIGHIDTVAYIRWSPDDRYLLSCSCDKSVILW 282
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 29.1 bits (62), Expect = 0.83
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +2
Query: 290 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 469
A + D + + +V+++ E N+++ N +H +P+ I SVD
Sbjct: 66 ATSLDENVVVSCGFGQDVYVWNPETNEFRDLGNNAQHPSECWSSCISPDGQTIAFTSVDG 125
Query: 470 NAYVWTQGDDGK 505
VW D K
Sbjct: 126 RIAVWDNPSDCK 137
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 29.1 bits (62), Expect = 0.83
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 398 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 487
H VMG+ TN + +CS DR+ VW+
Sbjct: 249 HRDAVMGLAMRRGTNEMFSCSADRSIKVWS 278
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 389 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 484
L EH +++ + W+PN ++ T S D +W
Sbjct: 345 LDEHIRQIVAMAWSPNGYQLATSSADDTVKIW 376
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 377 QTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD-GKWATTLGSSAYQPSSDL 553
+ L H RV+ + +PN IVT + D W D K + + SS + P+ +
Sbjct: 496 RVGTLKGHTDRVLYLAMSPNGENIVTGAADETLRFWKLFDSKSKHSASTMSSPFDPTMKI 555
Query: 554 R 556
R
Sbjct: 556 R 556
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +2
Query: 275 PITCHAW--NKDRSQIAFSPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPN 436
P C W ++ R Q N+ +IYK+ + WK+ L H + I WAP+
Sbjct: 170 PAFCVNWCPSRWREQYIAVGCMNDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPS 226
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +2
Query: 293 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIV 451
W++ Q+A N+N + ++ + + + EH V I W+P+ I+
Sbjct: 257 WDRSLGQLASGGNDNNLFVWDYRSS--RPLHKFEEHTAAVKAIGWSPHQRGIL 307
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 389 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 487
L+ H V G ++P+ +++CS D +A +W+
Sbjct: 375 LLSHSGPVYGTTFSPDNKYLLSCSEDASARLWS 407
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +2
Query: 398 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLGS 526
H V+ W PN N + T D A VW GK LGS
Sbjct: 299 HSDSVLTGSWHPNGNILATGGQDTTAKVWDIRALGKSFRNLGS 341
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 549 TCVKWSPMENXFAVGSGARLISICYF 626
TCV WSP A+G L+SI F
Sbjct: 368 TCVTWSPDGKFIAIGGKDDLVSIYSF 393
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = +2
Query: 284 CHAWNKDRSQIAFSPNNNEVH-----IYKKEGNDW-KQTNNLVEHD 403
CH+ + SQ+ SPN +E H + EGN+ + NN+V D
Sbjct: 66 CHSRSDVSSQVQNSPNKDEEHQTADLLASNEGNEKNNEENNVVSSD 111
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 431 PNTNRIVTCSVDRNAYVW 484
P +N IVTCS D ++W
Sbjct: 303 PPSNNIVTCSTDGLVHIW 320
>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 5.8
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = -1
Query: 400 VFHKVVCLLPVISFLFVYVNFIIVW 326
+FH V +L ++ + +++N++ VW
Sbjct: 245 IFHPVTYILAIVVPINIFLNYLFVW 269
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 341 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 502
+ +YK +G T + HD ++ + + + ++T S D +W++GD G
Sbjct: 369 LRVYKVDGKAPVSTVSHA-HDNSIVALRYNLRISLLLTASSDTTVKLWSRGDAG 421
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 398 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 484
H LR+ + + P N ++ S+D++ VW
Sbjct: 546 HSLRIYSVLYEPERNICISGSMDKSIRVW 574
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/71 (21%), Positives = 32/71 (45%)
Frame = +2
Query: 293 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRN 472
W+ D + + +N + +Y + + + +H V G+ W P IV+ S DR+
Sbjct: 136 WSVDSNFLIAGAMDNSLRLY--DAHTGQLLTQKFDHSHYVQGVCWDPLNQYIVSESSDRS 193
Query: 473 AYVWTQGDDGK 505
++ ++ K
Sbjct: 194 ICLYEIQEEKK 204
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 275 PITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNL 391
PI WN S++A S ++ V ++ + D+K T L
Sbjct: 26 PIRSLGWNLSGSRLASSSSSGSVLVWNSDRLDFKFTTEL 64
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +2
Query: 248 TLTFGXSCAPITCHAWNKDRSQIAFSPNNN 337
T+TFG H WN S + PN++
Sbjct: 6 TVTFGRKSNFCWTHFWNTQESYFVYDPNDH 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,636
Number of Sequences: 5004
Number of extensions: 48505
Number of successful extensions: 212
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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