Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_C14
         (820 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...    62   5e-10
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    42   6e-04
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590     41   0.001

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 31/70 (44%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +2

Query: 113 PPGGRRRXXXKLKRXXAHPNSYFMDVKCPGCYKITXVFSHXQKXVVWAGCSXXFVNHWGA 292
           PP    +   K KR    PNS+FMDVKC GC+ IT VFSH Q  VV  GC        G 
Sbjct: 12  PPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGG 71

Query: 293 -X*INXXCSF 319
              +   CSF
Sbjct: 72  KARLTEGCSF 81


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +2

Query: 113 PPGGRRRXXXKLKRXXAHPNSYFMDVKCPGCYKITXVF 226
           PP    +   K KR    PNS+FMDVKC GC+ ++  F
Sbjct: 12  PPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRF 49


>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
          Length = 45

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 113 PPGGRRRXXXKLKRXXAHPNSYFMDVKCPGCYKI 214
           PP    +   K KR    PNS+FMDVKC GC+ +
Sbjct: 12  PPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,320,411
Number of Sequences: 37544
Number of extensions: 170280
Number of successful extensions: 518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)