Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_C14
         (820 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal pro...    65   5e-11
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 27 protein.
          Length = 83

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 34/72 (47%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +2

Query: 113 PPGGRRRXXXKLKRXXAHPNSYFMDVKCPGCYKITXVFSHXQKXVVWAGCSXXFVNHW-G 289
           P   R     KLKR   HPNSYFMDVKC GC+KI+ VFSH    VV  GC+        G
Sbjct: 10  PEPQREIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCNTVLCQPTRG 69

Query: 290 AX*INXXCSF*K 325
              +   CSF K
Sbjct: 70  KAKLTEGCSFRK 81


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -3

Query: 662 GXXPPXXXFFFFXXGXXXPPPXXGXXPPPP 573
           G  PP    F    G   PPP  G  PPPP
Sbjct: 81  GGIPPPPPMF--AGGIPPPPPMMGGIPPPP 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,392,991
Number of Sequences: 27780
Number of extensions: 116280
Number of successful extensions: 372
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)