Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_C11
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      40   6e-04
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    36   0.010
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   6.0  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   6.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   6.0  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   6.0  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
 Frame = +1

Query: 559 IFNTNVVFXRNGAIIDRYRKINLF-REYSHTPALSPDLGYFDTDFGVXFSHFICFDIIFQ 735
           I+N+ +    NG +   YRK++LF  E  H    S D   F+T FG      IC+D  F 
Sbjct: 99  IYNSCIYITENGNLGGVYRKVHLFDTERKHFKKGS-DFPIFETSFG-KLGVMICWDTAF- 155

Query: 736 VPAVQSVQKLNVTD-VIFSTMWFSELPY 816
            P V  +  LN  D ++ +T W  E PY
Sbjct: 156 -PEVARIHALNGADLLVVATNW--ENPY 180


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 10/78 (12%)
 Frame = +1

Query: 529 GEPCPELKE-YIFNTNVVFXRNGAIIDRYRKINLFR-------EYSHTPALSPD--LGYF 678
           G   PE K+  ++NT +VF  +G +I  +RKI+LF         +  + +LSP   +   
Sbjct: 124 GGSIPERKDGKLYNTAMVFDPSGKLIAVHRKIHLFDIDIPGGVSFRESDSLSPGDAMTMV 183

Query: 679 DTDFGVXFSHFICFDIIF 732
           DT++G  F   IC+DI F
Sbjct: 184 DTEYG-KFGLGICYDIRF 200


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 481 VVVNGRELMDCTKNDTG 531
           V++NG E + CTKN TG
Sbjct: 224 VLLNGYECVPCTKNGTG 240


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 633 PEKVDLAISINNRPVPXKHHV 571
           P +   A+S+NN+P+P  +H+
Sbjct: 144 PHEASSAMSMNNKPIPGTNHL 164


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 481 VVVNGRELMDCTKNDTG 531
           V++NG E + CTKN TG
Sbjct: 224 VLLNGYECVPCTKNGTG 240


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 370  VPVYGSLKRYPIPAIHPDLYDX-ILVSISAAARSNQIYVVVNGREL 504
            VP +GS K    PA+   LYD  +LVSIS   +  ++Y+ ++  E+
Sbjct: 1388 VPRFGSFK---YPALK--LYDRGVLVSISHMPQKEKLYITISADEV 1428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,423
Number of Sequences: 5004
Number of extensions: 52897
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)