Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_C11
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 32 0.52
08_01_1048 + 10624027-10624575,10625332-10625522,10626044-106265... 32 0.68
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 32 0.68
07_03_0256 - 15875066-15877025,15877292-15877911 30 2.1
04_04_0502 - 25686982-25688361 29 3.6
07_01_0233 - 1703602-1705623 29 4.8
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332... 29 4.8
01_05_0121 - 18361285-18361560,18361828-18362073,18362331-18362519 28 8.4
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 32.3 bits (70), Expect = 0.52
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Frame = +1
Query: 559 IFNTNVVFXRNGAIIDRYRKINLFR---------EYSHTPALSPDLGYFDTDFGVXFSHF 711
++NT VF +G + ++RKI+LF + S T DL DTD G
Sbjct: 140 LYNTCCVFGSDGELKGKHRKIHLFDIDIPGKITFKESKTLTAGQDLTVVDTDVG-RIGIG 198
Query: 712 ICFDIIFQ 735
IC+DI FQ
Sbjct: 199 ICYDIRFQ 206
>08_01_1048 +
10624027-10624575,10625332-10625522,10626044-10626539,
10626664-10626749,10626853-10627033
Length = 500
Score = 31.9 bits (69), Expect = 0.68
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +1
Query: 376 VYGSLKRYPIPAIHPDLYDXILVSISAAARSNQIYVVVNGRELMDCTKNDTGEPCPELKE 555
VY ++ +P+ + D Y ++V + A+AR Q+Y + D D + PE E
Sbjct: 117 VYENVLFFPVVQLLRDRYPGVVVDVVASARGKQVYEMCKNVRYADV--YDPDDDWPEPAE 174
Query: 556 YIFNTNVVFXR 588
Y V+ R
Sbjct: 175 YTHQLGVLKNR 185
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 31.9 bits (69), Expect = 0.68
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 369 CTSLWLTEAIS----YTGDTPRFV*XYFSVNIGGCKK*SNLRCGQWPR 500
C+ W + +S YT P V YF +++GG + S+ RCG R
Sbjct: 480 CSDDWTAKTVSVMTFYTNPIPSVVQSYFILSLGGVTRTSHKRCGNQSR 527
>07_03_0256 - 15875066-15877025,15877292-15877911
Length = 859
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 466 SNQIYVVVNGRELMDCTKNDTGEPCPELKEYI--FNTNVVFXRNGAIIDRYRKINLFREY 639
+NQ+Y+ V + DC+ T P++K + F ++V GA+ D + IN REY
Sbjct: 145 ANQVYLEVKNQ--FDCSAFVTVSQNPDVKHVLAKFLSDVSGAIGGALADEHHLINKLREY 202
>04_04_0502 - 25686982-25688361
Length = 459
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 485 WSMAESSWTVLRMTPANLVRS*RSISLTQTWCLXGTGR 598
WS S +R+ P N++ S I Q+WC +GR
Sbjct: 368 WSRMPSHVPNIRVIPGNVIMSVTVIVYDQSWCFTQSGR 405
>07_01_0233 - 1703602-1705623
Length = 673
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 569 QTWCLXGTGRLLIDIARSTFSGNILTRPL*AQTWAISTQISEXXSVTLSAST 724
Q W G ID+A + F T+PL + + +S+ IS+ V LSA+T
Sbjct: 207 QIWIDYDGGAKQIDVALAPFKMAKPTKPLLSMPYDLSSVISDVAYVGLSAAT 258
>01_01_0447 -
3327727-3328144,3328438-3328688,3328820-3328909,
3329061-3329159,3329240-3329353,3329450-3329555,
3329661-3329740,3329913-3330173,3330271-3330507,
3330635-3330922
Length = 647
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 346 TNKTTAFVVPVYGSLKRYPIPAIHPDLYDXILVSISAAAR-SNQIYVV 486
+ KT AFVVPV L+R P P P ++ + + IS S+QIY V
Sbjct: 71 SGKTLAFVVPVVEILRRRPSP---PKPHEVLGIIISPTRELSSQIYNV 115
>01_05_0121 - 18361285-18361560,18361828-18362073,18362331-18362519
Length = 236
Score = 28.3 bits (60), Expect = 8.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 792 DVVFGVAVFNCCTIHXHTPTNEC 860
+++ FN CT H ++P NEC
Sbjct: 11 ELLLSTQFFNTCTSHHNSPRNEC 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,104,130
Number of Sequences: 37544
Number of extensions: 341187
Number of successful extensions: 701
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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