Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_C11
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   2.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.8  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   8.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 481 VVVNGRELMDCTKNDTGE 534
           +++NGR+LM C +  +G+
Sbjct: 229 IIMNGRDLMACAQTGSGK 246


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 328 FPELCLTNKTTAFVVPVYGSLKRYPIP 408
           FP LC  N   AF+VP + +L    +P
Sbjct: 45  FPYLCYKNGGGAFMVPYFIALALAGVP 71


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 328 FPELCLTNKTTAFVVPVYGSLKRYPIP 408
           FP LC  N   AF+VP + +L    +P
Sbjct: 98  FPYLCYKNGGGAFMVPYFIALALAGVP 124


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 548 SSGQGSPVSFLVQSM 504
           S+G G PVS +VQ+M
Sbjct: 183 STGMGGPVSLVVQAM 197


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +1

Query: 538 CPELKEYIFNTNVVFXRNGAIIDRYRKINLFREYSHTPALSPD 666
           CP        T   F   G  +D  ++++    ++++ ALSPD
Sbjct: 443 CPHFNVTDGETTKTFCCKGYCMDLLKELSKTINFTYSLALSPD 485


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 301 QPPQCNECSYEC 266
           +P +C +CSY C
Sbjct: 15  KPFKCEKCSYSC 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,197
Number of Sequences: 438
Number of extensions: 4148
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)