Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_C10
(862 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 32 0.60
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 0.66
AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical ... 25 0.98
Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 25 3.7
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 25 4.6
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 25 5.3
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 28 7.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 25 7.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 25 7.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 25 7.8
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 25 8.6
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 25 8.6
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.9 bits (69), Expect = 0.60
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = +2
Query: 710 GGXTLXXXXFXGGXPPPPPXFXXPPXXXKXXXFFXPXPPXKKIXXXXXPP 859
GG F GG PPPPP P P PP + PP
Sbjct: 81 GGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQPP 130
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 27.9 bits (59), Expect(2) = 0.66
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 566 PPPFF*KXXXXXKXPVXPPPXXPPPP 643
PPP P+ PPP PPPP
Sbjct: 46 PPPPICPPQFCPPPPMCPPPPPPPPP 71
Score = 25.0 bits (52), Expect(2) = 7.0
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = +2
Query: 566 PPPFF*KXXXXXKXPVXPPPXXPPPPL 646
PPP PPP PPPP+
Sbjct: 47 PPPICPPQFCPPPPMCPPPPPPPPPPM 73
Score = 22.6 bits (46), Expect(2) = 0.66
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 752 PPPPPXFXXPP 784
PPPPP PP
Sbjct: 67 PPPPPPMCPPP 77
Score = 21.8 bits (44), Expect(2) = 7.0
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 752 PPPPPXFXXPP 784
PPPPP PP
Sbjct: 68 PPPPPMCPPPP 78
>AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical
protein Y56A3A.6 protein.
Length = 798
Score = 24.6 bits (51), Expect(3) = 0.98
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 617 PPPXXPPPPL 646
PPP PPPPL
Sbjct: 754 PPPPPPPPPL 763
Score = 21.8 bits (44), Expect(3) = 0.98
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 752 PPPPPXFXXPP 784
PPPPP PP
Sbjct: 758 PPPPPLAAAPP 768
Score = 21.4 bits (43), Expect(3) = 0.98
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +2
Query: 608 PVXPPPXXPPPP 643
P PP PPPP
Sbjct: 750 PSSTPPPPPPPP 761
>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
protein K02E2.2 protein.
Length = 1021
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +2
Query: 566 PPPFF*KXXXXXKXPVXPPPXXPPPP 643
PPPFF PV PPP PPPP
Sbjct: 777 PPPFF-------ALPVPPPPPVPPPP 795
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 25.0 bits (52), Expect(2) = 3.7
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +2
Query: 545 NXXKXVXPPPFF*KXXXXXKXPVXPPPXXPPPP 643
N K PPP PPP PPPP
Sbjct: 61 NIVKATPPPPPPPPPLISILQQAPPPPPPPPPP 93
Score = 22.6 bits (46), Expect(2) = 3.7
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 752 PPPPPXFXXPP 784
PPPPP PP
Sbjct: 89 PPPPPTLKAPP 99
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 24.6 bits (51), Expect(2) = 4.6
Identities = 14/50 (28%), Positives = 16/50 (32%)
Frame = +2
Query: 497 PXPPPLXXXXXXXXXKNXXKXVXPPPFF*KXXXXXKXPVXPPPXXPPPPL 646
P PPP+ PPP PPP PPPP+
Sbjct: 542 PPPPPIAGLLAANGTNVPIPPPPPPPL------PQNLSGAPPPPPPPPPM 585
Score = 22.6 bits (46), Expect(2) = 4.6
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 752 PPPPPXFXXPP 784
PPPPP PP
Sbjct: 580 PPPPPMLGGPP 590
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 24.6 bits (51), Expect(2) = 5.3
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +2
Query: 560 VXPPPFF*KXXXXXKXPVXPPPXXPPPP 643
V PPP P+ PPP PP P
Sbjct: 53 VCPPPPPCPAQFCPPPPICPPPPPPPMP 80
Score = 22.6 bits (46), Expect(2) = 5.3
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 752 PPPPPXFXXPP 784
PPPPP PP
Sbjct: 73 PPPPPPMPCPP 83
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/52 (30%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Frame = +2
Query: 497 PXPPP---LXXXXXXXXXKNXXKXVXPPPFF*KXXXXXKXPVXPPPXXPPPP 643
P PPP + K PPP P PPP PPPP
Sbjct: 472 PAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPPPP 523
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 25.0 bits (52), Expect(2) = 7.6
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = +2
Query: 737 FXGGXPPPPPXFXXPPXXXKXXXFFXP 817
F GG PPPPP P + P
Sbjct: 780 FKGGPPPPPPPGMFAPMAPVIPDYLPP 806
Score = 21.4 bits (43), Expect(2) = 7.6
Identities = 11/27 (40%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Frame = +2
Query: 566 PPPFF*KXXXXXKXPVXPPP-XXPPPP 643
PPP P PPP PPPP
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPP 772
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 25.0 bits (52), Expect(2) = 7.6
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = +2
Query: 737 FXGGXPPPPPXFXXPPXXXKXXXFFXP 817
F GG PPPPP P + P
Sbjct: 780 FKGGPPPPPPPGMFAPMAPVIPDYLPP 806
Score = 21.4 bits (43), Expect(2) = 7.6
Identities = 11/27 (40%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Frame = +2
Query: 566 PPPFF*KXXXXXKXPVXPPP-XXPPPP 643
PPP P PPP PPPP
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPP 772
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 25.0 bits (52), Expect(2) = 7.8
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = +2
Query: 737 FXGGXPPPPPXFXXPPXXXKXXXFFXP 817
F GG PPPPP P + P
Sbjct: 363 FKGGPPPPPPPGMFAPMAPVIPDYLPP 389
Score = 21.4 bits (43), Expect(2) = 7.8
Identities = 11/27 (40%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Frame = +2
Query: 566 PPPFF*KXXXXXKXPVXPPP-XXPPPP 643
PPP P PPP PPPP
Sbjct: 329 PPPGGLPPISGGPPPPPPPPGGCPPPP 355
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 24.6 bits (51), Expect(2) = 8.6
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 608 PVXPPPXXPPPP 643
P PPP PPPP
Sbjct: 3 PPPPPPPPPPPP 14
Score = 21.8 bits (44), Expect(2) = 8.6
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 752 PPPPPXFXXPP 784
PPPPP PP
Sbjct: 13 PPPPPAASAPP 23
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 24.6 bits (51), Expect(2) = 8.6
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 608 PVXPPPXXPPPP 643
P PPP PPPP
Sbjct: 3 PPPPPPPPPPPP 14
Score = 21.8 bits (44), Expect(2) = 8.6
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 752 PPPPPXFXXPP 784
PPPPP PP
Sbjct: 13 PPPPPAASAPP 23
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,160,792
Number of Sequences: 27780
Number of extensions: 210734
Number of successful extensions: 1551
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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