Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_C08
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.009
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.26
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.61
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.80
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.2
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.5 bits (78), Expect = 0.009
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +1
Query: 562 PPPPPXXKKKXXPPPXXXXXXXXFFXXXXPPPPPXXXXXXXXXXNPPPPP 711
PPPP P P PPPPP PPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 31.9 bits (69), Expect = 0.11
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = +1
Query: 442 PPXXPPGXXXXPPXXGXLXXXPXPPXFXXPXLXXPPRXGXPPPPPXXKKKXXPPP 606
PP PP P + P PP P + PP PPPPP PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPI---PVPP--PAPIMGGPP---PPPPPPGVAGAGPPPP 778
Score = 29.1 bits (62), Expect = 0.80
Identities = 22/77 (28%), Positives = 22/77 (28%)
Frame = +1
Query: 475 PPXXGXLXXXPXPPXFXXPXLXXPPRXGXPPPPPXXKKKXXPPPXXXXXXXXFFXXXXPP 654
PP P P P P G PPPPP PPP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP-------PPPGVAGAG----PPPPPP 780
Query: 655 PPPXXXXXXXXXXNPPP 705
PPP P P
Sbjct: 781 PPPAVSAGGSRYYAPAP 797
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.26
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 648 PPPPPXXXXXXXXXXKPPPPPP 713
PPPPP PPPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 511 PPXFXXPXLXXPPRXGXPPPPPXXKKK 591
PP P PP PPPPP KK
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKK 35
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +1
Query: 511 PPXFXXPXLXXPPRXGXPPPPPXXKKKXXPPP 606
PP P P + PPPP KK+ P
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.61
Identities = 19/73 (26%), Positives = 20/73 (27%)
Frame = +1
Query: 442 PPXXPPGXXXXPPXXGXLXXXPXPPXFXXPXLXXPPRXGXPPPPPXXKKKXXPPPXXXXX 621
PP P P P PP P + P G PP PP P P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPS-VGVPPVPPPSTAPPVPTPSAGLP 1227
Query: 622 XXXFFXXXXPPPP 660
PP P
Sbjct: 1228 PVPVPTAKAPPVP 1240
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/55 (29%), Positives = 18/55 (32%)
Frame = +1
Query: 442 PPXXPPGXXXXPPXXGXLXXXPXPPXFXXPXLXXPPRXGXPPPPPXXKKKXXPPP 606
PP PP P + P PP P + P P P P K P P
Sbjct: 1189 PPVPPPSEAPPVPKPS-VGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.80
Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Frame = +1
Query: 562 PPPPPXXKKKXXPPPXXXXXXXXFFXXXXPPPPPXXXXXXXXXXNP-----PPPP 711
PPPPP ++ PP PPPPP P PPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNS--SLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Score = 29.1 bits (62), Expect = 0.80
Identities = 15/55 (27%), Positives = 17/55 (30%)
Frame = +1
Query: 442 PPXXPPGXXXXPPXXGXLXXXPXPPXFXXPXLXXPPRXGXPPPPPXXKKKXXPPP 606
PP PP P + PP + P G P PP PPP
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/57 (29%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Frame = +3
Query: 561 PXPPPXXKKKXXPPXXXXXXXXXXFXXXXPPPPPXXXXXXXXXXKP------PPPPP 713
P PPP + + PP PPPPP P PPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSL---PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +1
Query: 442 PPXXPPGXXXXPPXXGXLXXXPXPPXFXXPXLXXPPRXGXPPPPP 576
PP P G PP P P PP PPP P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 26.2 bits (55), Expect = 5.7
Identities = 27/120 (22%), Positives = 28/120 (23%), Gaps = 2/120 (1%)
Frame = +1
Query: 442 PPXXPPGXXXXPPXXGXLXXXPXPPXFXXPXLXXPPRXGXPPPPPXXKKKXXPPPXXXXX 621
PP P PP P PP PP G PP + P
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPI------PPPSNGTVSSPPNSPPRPIAPVSMNPA 283
Query: 622 XXXFFXXXXPPPPP--XXXXXXXXXXNPPPPPLXXXXXXXFXXFFFFXXXXXXXPPPPXP 795
PPP PPPPP PPPP P
Sbjct: 284 INSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/53 (28%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Frame = +2
Query: 506 PPPPXXXXPXSXX-PXGGXXXPPPPXXKKXXXPXXXXPXXXXXFFXXXXPPPP 661
PPPP S P G PPPP + P P PP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/54 (35%), Positives = 20/54 (37%)
Frame = -1
Query: 602 GGXXFFFXXGGGGGXPXRGGXXXXGXXKXGGXGXXXNXPXXGGXXFXPGGXXGG 441
GG F G GG P GG G G G + GG PGG GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFG----GFGGEGHHHGGHGGFGGGPGGFEGG 236
Score = 27.9 bits (59), Expect = 1.9
Identities = 29/89 (32%), Positives = 29/89 (32%)
Frame = -1
Query: 710 GGGGGFXXXXXXXXXXGGGGGXXXXKXXXXXXXXXGGGXXFFFXXGGGGGXPXRGGXXXX 531
G GGG GG GG GGG F GG GG GG
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF--EGGPGG--FGGGPGGF 247
Query: 530 GXXKXGGXGXXXNXPXXGGXXFXPGGXXG 444
G GG G P GG PGG G
Sbjct: 248 G----GGLGGFGGGP--GGFGGGPGGHGG 270
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.2
Identities = 21/76 (27%), Positives = 21/76 (27%), Gaps = 6/76 (7%)
Frame = +1
Query: 505 PXPPXFXXPXLXXPPRXGXPPP-----PPXXKKKXXPPPXXXXXXXXFFXXXXPP-PPPX 666
P P P PPR PPP PP K P PP P
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSL 190
Query: 667 XXXXXXXXXNPPPPPL 714
PPPPL
Sbjct: 191 PSAVPPMPPKVPPPPL 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,149
Number of Sequences: 5004
Number of extensions: 40594
Number of successful extensions: 195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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