Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_C06
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical pr...    28   10.0 
Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical pr...    28   10.0 
Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   10.0 
U00032-6|AAA50634.1|  389|Caenorhabditis elegans Hypothetical pr...    28   10.0 
AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassi...    28   10.0 
AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative pota...    28   10.0 

>Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical
           protein F08B12.3c protein.
          Length = 1086

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 104 SLCCLNLYVDCDWKHDRRGHQRSWQSR 184
           SLCCL L   C  K     H+  W++R
Sbjct: 690 SLCCLKLDEKCAHKSATSAHEYQWRNR 716


>Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical
           protein F08B12.3b protein.
          Length = 1107

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 104 SLCCLNLYVDCDWKHDRRGHQRSWQSR 184
           SLCCL L   C  K     H+  W++R
Sbjct: 711 SLCCLKLDEKCAHKSATSAHEYQWRNR 737


>Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical
           protein F08B12.3a protein.
          Length = 1119

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 104 SLCCLNLYVDCDWKHDRRGHQRSWQSR 184
           SLCCL L   C  K     H+  W++R
Sbjct: 711 SLCCLKLDEKCAHKSATSAHEYQWRNR 737


>U00032-6|AAA50634.1|  389|Caenorhabditis elegans Hypothetical
           protein F37A4.6 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 356 DGSLANSTGVPYFYMSPLDFSARDLTKNSRA 448
           DGS  +S+  P+FY+SP + S  D  K+SR+
Sbjct: 102 DGS--SSSSQPHFYLSPSNSSLFDARKSSRS 130


>AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassium
           channel protein.
          Length = 1107

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 104 SLCCLNLYVDCDWKHDRRGHQRSWQSR 184
           SLCCL L   C  K     H+  W++R
Sbjct: 711 SLCCLKLDEKCAHKSATSAHEYQWRNR 737


>AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative
           potassium channel Slo-2 protein.
          Length = 1119

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 104 SLCCLNLYVDCDWKHDRRGHQRSWQSR 184
           SLCCL L   C  K     H+  W++R
Sbjct: 711 SLCCLKLDEKCAHKSATSAHEYQWRNR 737


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,711,954
Number of Sequences: 27780
Number of extensions: 390764
Number of successful extensions: 936
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)