Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_C02
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.28 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.6  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   4.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 597  PPPPPPPP 620
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 598  PPPPPPXP 621
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 603  PPPPPPXP 626
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 597 PPPPPPPP 620
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 587 PXXPPPPPPP 616
           P  P PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 597 PPPPPPPPXP 626
           PP P PPP P
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 585 PXXXPPPPPP 614
           P   PPPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 587 PXXPPPPPPP 616
           P   PPPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 597 PPPPPPPPXP 626
           P P PPPP P
Sbjct: 339 PKPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 597  PPPPPPPP 620
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 585  PXXXPPPPPPPP 620
            P    P PPPPP
Sbjct: 1852 PVSGSPEPPPPP 1863


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/34 (29%), Positives = 11/34 (32%)
 Frame = +1

Query: 520 PXXXXPXPPXXKXPXXXXPXXXPXXXPPPPPPXP 621
           P    P P   + P        P   P P PP P
Sbjct: 107 PQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 140



 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/34 (29%), Positives = 11/34 (32%)
 Frame = +1

Query: 520 PXXXXPXPPXXKXPXXXXPXXXPXXXPPPPPPXP 621
           P    P P   + P        P   P P PP P
Sbjct: 133 PQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 166


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 649 GGXXXXXXGXGGGGGGGGXXXG 584
           GG        GGGGGG G   G
Sbjct: 36  GGSIVVGANNGGGGGGLGIASG 57


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/36 (27%), Positives = 11/36 (30%)
 Frame = +3

Query: 543 PXXKXPPXXXPXXXPXXXPPPPPPPPXPXXXXXXPP 650
           P  +  P   P       PP P   P P      PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,553
Number of Sequences: 438
Number of extensions: 6735
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)