Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_C01
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    71   2e-13

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 39/111 (35%), Positives = 53/111 (47%)
 Frame = +2

Query: 332 GRGRXWXVXLIPKFXXXXXXXXXXXIHXGVXRYLEFKSXEGXXVYXGGXISKVPVDXKXA 511
           GR R W V L+PKF           I+  V RY+EFK   G  VY  G I+KVP +   A
Sbjct: 66  GRDRDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVPGNEMEA 125

Query: 512 LASDLMGXFEXXRFRXFLIYVXXFQXXXAXXWXXFDPSTAXXQSLYXTFGL 664
           L S LM  FE  R + FL +V  ++      +   +      +S++  FGL
Sbjct: 126 LKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSMESVFKKFGL 176



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 25/45 (55%), Positives = 25/45 (55%)
 Frame = +1

Query: 136 MXXXYXVXVLGXGLKXCXLSGXLSVSGXXVLXXDRXXXYGGXSAS 270
           M   Y V VLG GL  C LSG LSV G  VL  DR   YG  SAS
Sbjct: 1   MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSAS 45



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 682 FXGXALALYLDXXYLXXPAIRPFXXSVVF*S-LXKYGXSPXLXPLXGLXAPPXG 840
           F G A+ALYLD  YL  PA       +++ S + K+G SP + PL GL   P G
Sbjct: 183 FIGHAMALYLDDAYLKKPARETRERILLYASSIAKFGKSPYIYPLYGLGELPQG 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,728,817
Number of Sequences: 5004
Number of extensions: 16981
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)