Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_C01
(857 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 71 9e-13
07_01_1091 - 10015180-10015236,10015705-10015779,10015874-100161... 71 1e-12
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833... 70 2e-12
03_02_0544 - 9362615-9362674,9362783-9362857,9362934-9363144,936... 69 4e-12
12_02_1229 + 27197464-27197481,27200438-27201583,27201935-272022... 33 0.39
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 71.3 bits (167), Expect = 9e-13
Identities = 40/116 (34%), Positives = 51/116 (43%)
Frame = +2
Query: 317 PDXTYGRGRXWXVXLIPKFXXXXXXXXXXXIHXGVXRYLEFKSXEGXXVYXGGXISKVPV 496
P G R + V ++PKF IH V +YL FK+ +G V+ G I KVP
Sbjct: 61 PPAHLGASRDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVPA 120
Query: 497 DXKXALASDLMGXFEXXRFRXFLIYVXXFQXXXAXXWXXFDPSTAXXQSLYXTFGL 664
AL S LMG FE R R F IYV + D +T + L +GL
Sbjct: 121 TDMEALKSPLMGLFEKRRARNFFIYVQDYDEADPKTHQGLDLTTMTTRELIAKYGL 176
Score = 50.4 bits (115), Expect = 2e-06
Identities = 26/45 (57%), Positives = 26/45 (57%)
Frame = +1
Query: 136 MXXXYXVXVLGXGLKXCXLSGXLSVSGXXVLXXDRXXXYGGXSAS 270
M Y V VLG GLK C LSG LSV G VL DR YGG S S
Sbjct: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTS 45
Score = 35.5 bits (78), Expect = 0.055
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 682 FXGXALALYLDXXYLXXPAIRPFXXSVVF-*SLXKY-GXSPXLXPLXGLXAPPXG 840
F G ALAL+ D YL PAI ++ SL ++ G SP + PL GL P G
Sbjct: 183 FIGHALALHRDDRYLNEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQG 237
>07_01_1091 -
10015180-10015236,10015705-10015779,10015874-10016149,
10016204-10016332,10017070-10017171,10017626-10017688,
10017776-10017856,10018218-10018314,10019064-10019236,
10019327-10019434,10019706-10019789,10019985-10020047,
10020483-10020569
Length = 464
Score = 70.9 bits (166), Expect = 1e-12
Identities = 42/130 (32%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Frame = +2
Query: 281 LXXLFAKFXAPA-PDXTYGRGRXWXVXLIPKFXXXXXXXXXXXIHXGVXRYLEFKSXEGX 457
L L+ +F P G R + V +IPKF IH GV +YL FK+ +G
Sbjct: 48 LNQLWKRFKGEGTPPAQIGASRDYNVDMIPKFMMANGTLVRVLIHTGVTKYLSFKAVDGS 107
Query: 458 XVYXGGXISKVPVDXKXALASDLMGXFEXXRFRXFLIYVXXFQXXXAXXWXXFDPSTAXX 637
V+ G I KVP AL S LMG FE R F ++V ++ +D +
Sbjct: 108 YVFNKGKIHKVPSTDMEALKSPLMGLFEKRRAGKFFLFVQDYKENDPSTHKGYDLNKMTT 167
Query: 638 QSLYXTFGLD 667
+ L +GLD
Sbjct: 168 KELISKYGLD 177
Score = 47.2 bits (107), Expect = 2e-05
Identities = 25/45 (55%), Positives = 25/45 (55%)
Frame = +1
Query: 136 MXXXYXVXVLGXGLKXCXLSGXLSVSGXXVLXXDRXXXYGGXSAS 270
M Y V VLG GLK C LSG LSV VL DR YGG S S
Sbjct: 1 MDVEYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGDSTS 45
>05_03_0407 +
13582595-13582681,13583067-13583129,13583289-13583372,
13583757-13583864,13584018-13584190,13585190-13585301,
13585424-13585504,13585611-13585673,13585764-13585865,
13586063-13586187,13586316-13586526,13586614-13586688,
13586950-13587003
Length = 445
Score = 70.1 bits (164), Expect = 2e-12
Identities = 39/116 (33%), Positives = 51/116 (43%)
Frame = +2
Query: 317 PDXTYGRGRXWXVXLIPKFXXXXXXXXXXXIHXGVXRYLEFKSXEGXXVYXGGXISKVPV 496
P G + + V ++PKF IH V +YL FK+ +G V+ G I KVP
Sbjct: 61 PPAHLGSSKDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVPA 120
Query: 497 DXKXALASDLMGXFEXXRFRXFLIYVXXFQXXXAXXWXXFDPSTAXXQSLYXTFGL 664
AL S LMG FE R R F IYV + D +T + L +GL
Sbjct: 121 TDMEALKSPLMGLFEKRRARNFFIYVQDYNEADPKTHQGLDLTTMTTRELIAKYGL 176
Score = 50.4 bits (115), Expect = 2e-06
Identities = 26/45 (57%), Positives = 26/45 (57%)
Frame = +1
Query: 136 MXXXYXVXVLGXGLKXCXLSGXLSVSGXXVLXXDRXXXYGGXSAS 270
M Y V VLG GLK C LSG LSV G VL DR YGG S S
Sbjct: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTS 45
Score = 35.5 bits (78), Expect = 0.055
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 682 FXGXALALYLDXXYLXXPAIRPFXXSVVF-*SLXKY-GXSPXLXPLXGLXAPPXG 840
F G ALAL+ D YL PAI ++ SL ++ G SP + PL GL P G
Sbjct: 183 FIGHALALHRDDRYLNEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQG 237
>03_02_0544 -
9362615-9362674,9362783-9362857,9362934-9363144,
9363279-9363403,9363492-9363593,9363676-9363738,
9363817-9363897,9364248-9364359,9364454-9364626,
9364722-9364829,9364909-9364992,9365131-9365193,
9365652-9365738
Length = 447
Score = 69.3 bits (162), Expect = 4e-12
Identities = 37/112 (33%), Positives = 51/112 (45%)
Frame = +2
Query: 332 GRGRXWXVXLIPKFXXXXXXXXXXXIHXGVXRYLEFKSXEGXXVYXGGXISKVPVDXKXA 511
G + + V ++PKF IH V +YL FK+ +G VY G I KVP A
Sbjct: 66 GVSKEYNVDMVPKFMMANGALVRVLIHTSVTKYLNFKAVDGSFVYNNGKIHKVPATDVEA 125
Query: 512 LASDLMGXFEXXRFRXFLIYVXXFQXXXAXXWXXFDPSTAXXQSLYXTFGLD 667
L S+LMG FE R R F IYV ++ D + + +GL+
Sbjct: 126 LKSNLMGLFEKRRARKFFIYVQDYEEDDPKSHEGLDLHKVTTREVISKYGLE 177
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/45 (55%), Positives = 26/45 (57%)
Frame = +1
Query: 136 MXXXYXVXVLGXGLKXCXLSGXLSVSGXXVLXXDRXXXYGGXSAS 270
M Y V VLG GLK C +SG LSV G VL DR YGG S S
Sbjct: 1 MDEEYDVIVLGTGLKECIISGLLSVDGLKVLHMDRNDYYGGESTS 45
Score = 33.5 bits (73), Expect = 0.22
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 682 FXGXALALYLDXXYLXXPAIRPFXXSVVF-*SLXKY-GXSPXLXPLXGLXAPP 834
F G ALAL+ D YL PAI ++ SL ++ G SP + PL GL P
Sbjct: 183 FIGHALALHRDDNYLDEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLAELP 235
>12_02_1229 +
27197464-27197481,27200438-27201583,27201935-27202201,
27202849-27202882,27202997-27203100,27203174-27203308,
27203367-27203511,27203864-27203880
Length = 621
Score = 32.7 bits (71), Expect = 0.39
Identities = 16/27 (59%), Positives = 16/27 (59%)
Frame = +1
Query: 136 MXXXYXVXVLGXGLKXCXLSGXLSVSG 216
M Y V VLG GL C LSG LSV G
Sbjct: 449 MDEEYDVIVLGTGLMECILSGLLSVDG 475
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,834,992
Number of Sequences: 37544
Number of extensions: 119546
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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