Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_C01
(857 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical p... 114 7e-26
Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical p... 114 7e-26
U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein. 114 7e-26
AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical ... 31 1.1
AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical ... 31 1.1
>Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical
protein Y57G11C.10b protein.
Length = 459
Score = 114 bits (275), Expect = 7e-26
Identities = 61/134 (45%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Frame = +2
Query: 272 LPRLXXLFAKFXAPA--PDXTYGRGRXWXVXLIPKFXXXXXXXXXXXIHXGVXRYLEFKS 445
L L L+ KF P P GRGR W V LIPKF IH GV RYLEFKS
Sbjct: 46 LTPLEQLYEKFHGPQAKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKS 105
Query: 446 XEGXXVYXGGXISKVPVDXKXALASDLMGXFEXXRFRXFLIYVXXFQXXXAXXWXXFDPS 625
E V GG I KVP D ALA+ LMG FE RF+ FL++V F W DP
Sbjct: 106 IEASFVVKGGKIYKVPADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPH 165
Query: 626 TAXXQSLYXTFGLD 667
+ Q +Y FGLD
Sbjct: 166 NSTMQQVYEKFGLD 179
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/48 (58%), Positives = 29/48 (60%)
Frame = +1
Query: 136 MXXXYXVXVLGXGLKXCXLSGXLSVSGXXVLXXDRXXXYGGXSASXTP 279
M Y VLG GLK C +SG LSVSG VL DR YGG SAS TP
Sbjct: 1 MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLTP 48
Score = 34.7 bits (76), Expect = 0.085
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 682 FXGXALALYLDXXYLXXPAIRPFXXSVVF*-SLXKYGXSPXLXPLXGLXAPPXG 840
F G ALALY D + P ++ SL +YG SP L PL GL P G
Sbjct: 185 FTGHALALYRDDEHKNQPYAPAVEKIRLYSDSLARYGKSPYLYPLYGLGELPQG 238
>Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical
protein Y57G11C.10a protein.
Length = 444
Score = 114 bits (275), Expect = 7e-26
Identities = 61/134 (45%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Frame = +2
Query: 272 LPRLXXLFAKFXAPA--PDXTYGRGRXWXVXLIPKFXXXXXXXXXXXIHXGVXRYLEFKS 445
L L L+ KF P P GRGR W V LIPKF IH GV RYLEFKS
Sbjct: 46 LTPLEQLYEKFHGPQAKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKS 105
Query: 446 XEGXXVYXGGXISKVPVDXKXALASDLMGXFEXXRFRXFLIYVXXFQXXXAXXWXXFDPS 625
E V GG I KVP D ALA+ LMG FE RF+ FL++V F W DP
Sbjct: 106 IEASFVVKGGKIYKVPADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPH 165
Query: 626 TAXXQSLYXTFGLD 667
+ Q +Y FGLD
Sbjct: 166 NSTMQQVYEKFGLD 179
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/48 (58%), Positives = 29/48 (60%)
Frame = +1
Query: 136 MXXXYXVXVLGXGLKXCXLSGXLSVSGXXVLXXDRXXXYGGXSASXTP 279
M Y VLG GLK C +SG LSVSG VL DR YGG SAS TP
Sbjct: 1 MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLTP 48
Score = 34.7 bits (76), Expect = 0.085
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 682 FXGXALALYLDXXYLXXPAIRPFXXSVVF*-SLXKYGXSPXLXPLXGLXAPPXG 840
F G ALALY D + P ++ SL +YG SP L PL GL P G
Sbjct: 185 FTGHALALYRDDEHKNQPYAPAVEKIRLYSDSLARYGKSPYLYPLYGLGELPQG 238
>U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein.
Length = 444
Score = 114 bits (275), Expect = 7e-26
Identities = 61/134 (45%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Frame = +2
Query: 272 LPRLXXLFAKFXAPA--PDXTYGRGRXWXVXLIPKFXXXXXXXXXXXIHXGVXRYLEFKS 445
L L L+ KF P P GRGR W V LIPKF IH GV RYLEFKS
Sbjct: 46 LTPLEQLYEKFHGPQAKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKS 105
Query: 446 XEGXXVYXGGXISKVPVDXKXALASDLMGXFEXXRFRXFLIYVXXFQXXXAXXWXXFDPS 625
E V GG I KVP D ALA+ LMG FE RF+ FL++V F W DP
Sbjct: 106 IEASFVVKGGKIYKVPADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPH 165
Query: 626 TAXXQSLYXTFGLD 667
+ Q +Y FGLD
Sbjct: 166 NSTMQQVYEKFGLD 179
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/48 (58%), Positives = 29/48 (60%)
Frame = +1
Query: 136 MXXXYXVXVLGXGLKXCXLSGXLSVSGXXVLXXDRXXXYGGXSASXTP 279
M Y VLG GLK C +SG LSVSG VL DR YGG SAS TP
Sbjct: 1 MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLTP 48
Score = 34.7 bits (76), Expect = 0.085
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 682 FXGXALALYLDXXYLXXPAIRPFXXSVVF*-SLXKYGXSPXLXPLXGLXAPPXG 840
F G ALALY D + P ++ SL +YG SP L PL GL P G
Sbjct: 185 FTGHALALYRDDEHKNQPYAPAVEKIRLYSDSLARYGKSPYLYPLYGLGELPQG 238
>AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical
protein Y67D2.1b protein.
Length = 353
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 154 VXVLGXGLKXCXLSGXLSVSGXXVLXXDRXXXYGGXSASXT 276
V VLG GL L+ + +G VL DR YGG +S T
Sbjct: 11 VVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFT 51
>AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical
protein Y67D2.1a protein.
Length = 510
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 154 VXVLGXGLKXCXLSGXLSVSGXXVLXXDRXXXYGGXSASXT 276
V VLG GL L+ + +G VL DR YGG +S T
Sbjct: 11 VVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFT 51
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,791,840
Number of Sequences: 27780
Number of extensions: 100451
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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