Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_B23
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.69 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.69 
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   8.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 29/104 (27%), Positives = 34/104 (32%), Gaps = 11/104 (10%)
 Frame = +3

Query: 624 SIGSXPLDEPSQKSXLXSEVAXPPXXYKXPXAFPP------GNXPRALSXFRPLAXLPXX 785
           S  S P   P  +S     +  PP     P   PP      G  P  LS  R ++  P  
Sbjct: 332 SNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391

Query: 786 P--VPPFSXSG---NGXAXSHXXPPXXXXPPSRXXVPPXPPPGA 902
           P  +P  S       G A     PP    P      PP  PP A
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSA 435


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 25/92 (27%), Positives = 30/92 (32%), Gaps = 1/92 (1%)
 Frame = +3

Query: 624  SIGSXPLDEPSQKSXLXS-EVAXPPXXYKXPXAFPPGNXPRALSXFRPLAXLPXXPVPPF 800
            S+ + P+  PS    +    VA PP     P   PP   P   S   P    P   +PP 
Sbjct: 1127 SVAAPPVPVPSGAPPVPKPSVAAPPVP--APSGAPPVPKP---SVAAPPVPAPSSGIPPV 1181

Query: 801  SXSGNGXAXSHXXPPXXXXPPSRXXVPPXPPP 896
                 G             P     VPP PPP
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +3

Query: 756 FRPLAXLPXXPVPPFSXSGNGXAXSHXXPPXXXXPPSRXXVPPXPPP 896
           + P A  P   +P  S  G G   +   PP    P +    PP PPP
Sbjct: 143 YHPAATAPSEFMP--SIPGFGNLPNPAMPPIPFLPFNPAAQPPFPPP 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,573,980
Number of Sequences: 5004
Number of extensions: 15309
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)