Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_B19
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41625-2|ABS19463.1|  584|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U41625-1|AAA83325.2|  586|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AF304125-1|AAG50238.1|  542|Caenorhabditis elegans 1D304 protein.      28   9.5  
AC024201-8|AAF36020.1|  542|Caenorhabditis elegans Hypothetical ...    28   9.5  

>U41625-2|ABS19463.1|  584|Caenorhabditis elegans Hypothetical
           protein K03A1.2b protein.
          Length = 584

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 483 FSGLXXLXYLNLSTXXLXXIPSDLFWXXPXLXXLXLSSXVFESL 614
           F GL  L  L+L    +  +P+D+F   P L  L L     E +
Sbjct: 297 FKGLDSLEELSLDNCNIENLPADIFEYLPKLVKLSLRENPLEEI 340


>U41625-1|AAA83325.2|  586|Caenorhabditis elegans Hypothetical
           protein K03A1.2a protein.
          Length = 586

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 483 FSGLXXLXYLNLSTXXLXXIPSDLFWXXPXLXXLXLSSXVFESL 614
           F GL  L  L+L    +  +P+D+F   P L  L L     E +
Sbjct: 297 FKGLDSLEELSLDNCNIENLPADIFEYLPKLVKLSLRENPLEEI 340


>AF304125-1|AAG50238.1|  542|Caenorhabditis elegans 1D304 protein.
          Length = 542

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
 Frame = +3

Query: 426 ALKLLXXSXXLXFWXGXXAFSGLXXLXYLNLS-TXXLXXIPSDLFWXXPXLXXLXLSSXV 602
           ALK L  S  L       +F GL  L YLN+S +  L  I    F     L  L +SS  
Sbjct: 261 ALKTLDLSSNLFVSLETASFDGLPALQYLNISHSRNLKTIQMATFVQLSSLHWLSISSSA 320

Query: 603 FESLQXXPF-XMPP 641
              +    F  +PP
Sbjct: 321 LTHIHPSAFNPIPP 334


>AC024201-8|AAF36020.1|  542|Caenorhabditis elegans Hypothetical
           protein Y71F9B.8 protein.
          Length = 542

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
 Frame = +3

Query: 426 ALKLLXXSXXLXFWXGXXAFSGLXXLXYLNLS-TXXLXXIPSDLFWXXPXLXXLXLSSXV 602
           ALK L  S  L       +F GL  L YLN+S +  L  I    F     L  L +SS  
Sbjct: 261 ALKTLDLSSNLFVSLETASFDGLPALQYLNISHSRNLKTIQMATFVQLSSLHWLSISSSA 320

Query: 603 FESLQXXPF-XMPP 641
              +    F  +PP
Sbjct: 321 LTHIHPSAFNPIPP 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,862,921
Number of Sequences: 27780
Number of extensions: 38696
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)