Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_B18
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760     40   0.003
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435...    30   2.7  

>03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760
          Length = 184

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 18/72 (25%), Positives = 31/72 (43%)
 Frame = +2

Query: 446 TXFCIWAFTPXSFLXXXXXXXXPQKYWSTALPIXFLVALPVFAFLIYPSINXXLTPXIXS 625
           T + +WA+ P   L        P +YW+ A+P  F++       ++Y   N   TP    
Sbjct: 67  TVYLVWAYMPERCLRSLGITYYPSRYWALAVP-SFVIVATALCMVVYVGFNFLATP---P 122

Query: 626 PXXFXXXFSDFT 661
           P  F   F +++
Sbjct: 123 PTSFNTIFDEYS 134


>10_08_0985 -
           22042801-22042963,22043019-22043138,22043261-22043562,
           22044055-22044351,22044448-22044556,22044826-22045358,
           22045446-22045644,22045741-22045865,22045937-22046020,
           22046093-22046221,22046337-22046465,22046593-22046739,
           22047106-22047346,22047859-22047980
          Length = 899

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +2

Query: 452 FCIWAFTPXSFLXXXXXXXXPQKYWSTALPIXFLVALPVFAFLIYPSINXXLTP 613
           +  WA+ P  +L        P ++W+ A+P   L A      ++Y + N  L P
Sbjct: 784 YLAWAYLPEPWLRFLGVTYYPARHWALAMPSLLLEA-AAQGMVLYMASNFLLAP 836


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,855,628
Number of Sequences: 37544
Number of extensions: 71980
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)