Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_B18
         (855 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-2|CAB07689.2|  890|Caenorhabditis elegans Hypothetical pr...    36   0.028
AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine re...    29   4.2  

>Z93393-2|CAB07689.2|  890|Caenorhabditis elegans Hypothetical
           protein Y48E1B.2a protein.
          Length = 890

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 19/67 (28%), Positives = 23/67 (34%)
 Frame = +2

Query: 359 PAMPEHTPAPTPXXXXXXXXXXXXXXTXLTXFCIWAFTPXSFLXXXXXXXXPQKYWSTAL 538
           P+   H P P P              T    + IWA TP   L        P K W+ A+
Sbjct: 19  PSEEIHLPGPHPARGIYGFALYIVSWTLFVIYLIWAITPVPILYRLGITYIPSKLWALAI 78

Query: 539 PIXFLVA 559
            I F  A
Sbjct: 79  GIFFPTA 85


>AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 33 protein.
          Length = 296

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 396 QXLYMASFCTYLAXXP*XCFVFGLLXXXVFYXILXFITIHKN 521
           + +++  FC Y    P  C VFG      FY    F TIHK+
Sbjct: 140 EEIWLFKFCDYKLDIPSNCKVFGCAVNSCFY---SFWTIHKS 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,807,638
Number of Sequences: 27780
Number of extensions: 69813
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)