Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_B16
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   126   3e-30
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   126   4e-30

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  126 bits (305), Expect = 3e-30
 Identities = 73/171 (42%), Positives = 85/171 (49%), Gaps = 1/171 (0%)
 Frame = +2

Query: 236 FVFKAPIRPDLVNDVHVSMSKNSRXPYCVSXEAGXQTSAESWGTGRAVARIPXXXXXXXX 415
           FVFKAPIRPDLV  VH +++KN R PY VS +AG QTSAESWGTGRA+ARIP        
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 416 XXXXXXXXXXXXXXRMFAPTKPWXXXXXXXXXXXXRXXXXXXXXXTGVQXSFRLXXXLLT 595
                         RMFAPTK W            R         +GV          + 
Sbjct: 86  RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIE 145

Query: 596 RF-RASLVVADQVQEIXKXKXAVIFLRRLKAWSDILKVYXSXXLRAGKKDL 745
                 LVV D VQ   K K AV  L+ +KA+ D++KV  S  LRAGK  L
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKL 196


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  126 bits (304), Expect = 4e-30
 Identities = 73/171 (42%), Positives = 85/171 (49%), Gaps = 1/171 (0%)
 Frame = +2

Query: 236 FVFKAPIRPDLVNDVHVSMSKNSRXPYCVSXEAGXQTSAESWGTGRAVARIPXXXXXXXX 415
           FVFKAPIRPDLV  VH +++KN R PY VS +AG QTSAESWGTGRA+ARIP        
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 416 XXXXXXXXXXXXXXRMFAPTKPWXXXXXXXXXXXXRXXXXXXXXXTGVQXSFRLXXXLLT 595
                         RMFAPTK W            R         +GV          + 
Sbjct: 86  RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIE 145

Query: 596 RF-RASLVVADQVQEIXKXKXAVIFLRRLKAWSDILKVYXSXXLRAGKKDL 745
                 LVV D VQ   K K AV  L+ +KA+ D++KV  S  LRAGK  L
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKL 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,414
Number of Sequences: 5004
Number of extensions: 26357
Number of successful extensions: 54
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)