Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_B16
         (920 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                          100   2e-21
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    97   2e-20
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395...    29   5.2  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    28   9.1  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  100 bits (239), Expect = 2e-21
 Identities = 61/167 (36%), Positives = 77/167 (46%), Gaps = 1/167 (0%)
 Frame = +2

Query: 239 VFKAPIRPDLVNDVHVSMSKNSRXPYCVSXEAGXQTSAESWGTGRAVARIPXXXXXXXXX 418
           VF+AP+RPD+V  VH  +S N R PY VS  AG QTSAESWGTGRAV+RIP         
Sbjct: 31  VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 90

Query: 419 XXXXXXXXXXXXXRMFAPTKPWXXXXXXXXXXXXRXXXXXXXXXTGV-QXSFRLXXXLLT 595
                        RMFAPTK W            R         T V          + T
Sbjct: 91  AGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIET 150

Query: 596 RFRASLVVADQVQEIXKXKXAVIFLRRLKAWSDILKVYXSXXLRAGK 736
                LV++D  + I K   A+  L+++ A++D  K   S  +R GK
Sbjct: 151 VPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGK 197


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 60/167 (35%), Positives = 76/167 (45%), Gaps = 1/167 (0%)
 Frame = +2

Query: 239 VFKAPIRPDLVNDVHVSMSKNSRXPYCVSXEAGXQTSAESWGTGRAVARIPXXXXXXXXX 418
           V +APIRPD+V   H  +S N R PY VS  AG QTSAESWGTGRAV+RIP         
Sbjct: 30  VLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 89

Query: 419 XXXXXXXXXXXXXRMFAPTKPWXXXXXXXXXXXXRXXXXXXXXXTGVQXSFRLXXXLLTR 598
                        RMFAPTK W            R         T V          +  
Sbjct: 90  AGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRIEG 149

Query: 599 F-RASLVVADQVQEIXKXKXAVIFLRRLKAWSDILKVYXSXXLRAGK 736
                LVV+D ++ I K   ++  L+++ A++D  K   S  +RAGK
Sbjct: 150 VPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGK 196


>10_01_0359 +
           3956527-3956616,3957623-3957818,3958102-3959418,
           3959482-3960445,3960588-3960648,3961500-3961946
          Length = 1024

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 476 SWGRTYVHHDTXYRRHPDRTXEYHH 402
           SWGR   H D   RR P R+  +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = -1

Query: 470 GRTYVHHDTXYRRHPDRTXEYHHH---GHAEFGRQH 372
           GR + HH     RH     ++HHH   GH +  R H
Sbjct: 533 GRHHRHHHDHRHRHGHSHGDHHHHYHGGHHQRRRHH 568


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,654,950
Number of Sequences: 37544
Number of extensions: 235901
Number of successful extensions: 583
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)