Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_B16
         (920 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   103   2e-22
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   6.2  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  103 bits (246), Expect = 2e-22
 Identities = 62/170 (36%), Positives = 82/170 (48%), Gaps = 1/170 (0%)
 Frame = +2

Query: 239 VFKAPIRPDLVNDVHVSMSKNSRXPYCVSXEAGXQTSAESWGTGRAVARIPXXXXXXXXX 418
           VF+ PIRPDLV+ +   + +N R  + V+ +AG Q SAESWGTGRAVARIP         
Sbjct: 26  VFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHR 85

Query: 419 XXXXXXXXXXXXXRMFAPTKPWXXXXXXXXXXXXRXXXXXXXXXTGVQXSFRLXXXLLTR 598
                         MFAP K +            R         +G+    +    ++ +
Sbjct: 86  SGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQ 145

Query: 599 F-RASLVVADQVQEIXKXKXAVIFLRRLKAWSDILKVYXSXXLRAGKKDL 745
                LVV+D+V+   K K AV+FLRR   W+DI KVY S   RAGK  L
Sbjct: 146 VAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKL 195


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 455 HHDTXYRRHPDRTXEYHHHGHAEFGRQH 372
           HHD  +++H  R    HHHGH   G  H
Sbjct: 120 HHDGHHKKH-GRKEHDHHHGH-HHGHHH 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,847,022
Number of Sequences: 27780
Number of extensions: 167300
Number of successful extensions: 333
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)