Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_B16
         (920 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   2.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.8  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   9.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = -1

Query: 455 HHDTXYRRHPDRTXEYHHHGHAEFGRQHVQY 363
           H    +   P     +HHH H     QH+ Y
Sbjct: 336 HQHGNHTMGPTMGPPHHHHHHQTQSLQHLHY 366


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
 Frame = -1

Query: 455 HHDTXYRRHPD-RTXEYHHHGHA 390
           HH T    H       +HHH HA
Sbjct: 415 HHHTMGHGHSHIHATPHHHHSHA 437


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 627 WSATTREARNLVN 589
           W   T EA+NL+N
Sbjct: 136 WDTVTPEAKNLIN 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,681
Number of Sequences: 438
Number of extensions: 2000
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)