Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_B13
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      42   1e-04
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    38   0.001
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    29   1.1  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    26   5.9  

>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +3

Query: 291 MNKDW-HSGXFCCWQCDESLTGQ-RYVLRDEXPYCIKCYESVFANGCEECXK-IIGIDSK 461
           +N DW H     C  C E        + RD+  +C  CY++ +A  C++C K I+GI  K
Sbjct: 332 INNDWFHENHHFCAGCSEVFNVNIPCIYRDDLYWCQTCYDNKYAVKCKKCRKPILGISVK 391

Query: 462 DLSYKDXHWXEAXFLCAXCRVSLVD 536
                D  +    + C  C   L D
Sbjct: 392 G---SDGEYHSQCWTCGACNALLGD 413



 Score = 33.1 bits (72), Expect = 0.051
 Identities = 20/82 (24%), Positives = 31/82 (37%)
 Frame = +3

Query: 273 GEYTKAMNKDWHSGXFCCWQCDESLTGQRYVLRDEXPYCIKCYESVFANGCEECXKIIGI 452
           G    A  K  H   F C  C ++L    +  R+   YC   Y   F+  C+ C     I
Sbjct: 268 GRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKFYCHLDYHEQFSPRCKHCK--TPI 325

Query: 453 DSKDLSYKDXHWXEAXFLCAXC 518
           + + +   +  + E    CA C
Sbjct: 326 EDQAVHINNDWFHENHHFCAGC 347



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 273 GEYTKAMNKDWHSGXFCCWQCDESLTGQRYVLRDEXPYCIKC 398
           G   K  + ++HS  + C  C+  L  + Y + +  P C  C
Sbjct: 387 GISVKGSDGEYHSQCWTCGACNALLGDEGYFMIENTPICRPC 428


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = +3

Query: 303 WHSGXFCCWQCDESLTGQRYVL---RDEXPYCIKCYESVFANGCEECXKIIGIDSKDLSY 473
           WH   FCC +CD+ L     +L    D  P C  C     A+ C  C   I  D   +S 
Sbjct: 40  WHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSC-----AHTCTACRMRIK-DYALMSG 93

Query: 474 KDXHWXEAXFLCAXCRVSLVD 536
            D +  E  F C  CR  ++D
Sbjct: 94  YDSYHREC-FRCHDCRKQIID 113


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +3

Query: 273 GEYTKAMNKDWHSGXFCCWQCDESL-TGQRYVLRDEXPYCIKCYESVFANGCEEC 434
           G Y  A+NK +H   F C  C         Y   +   YC   Y ++FA  C  C
Sbjct: 189 GYYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYCHYHYSTLFAARCCGC 243


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 444 IGIDSKDLSYKDXHWXEAXFL 506
           +GI+ K+ S K  +W EA FL
Sbjct: 94  MGIEQKEFSIKGWNWGEANFL 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,758,944
Number of Sequences: 5004
Number of extensions: 21696
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)