Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_B12
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844...    29   3.6  
05_02_0022 + 5682045-5682301,5682477-5682720                           29   6.3  

>01_07_0232 +
           42182942-42183490,42183593-42183661,42184320-42184451,
           42184547-42184600,42184714-42184758,42185383-42185522,
           42185777-42185902,42185985-42186002,42186631-42187276,
           42188121-42188843
          Length = 833

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 23/51 (45%), Positives = 24/51 (47%)
 Frame = +1

Query: 136 LFSPRLRSRQLPATSSRXLSALWRGRATPSSAXXXXXXXXXQLPPSRLARS 288
           L  PRLRS   P  +SR LSAL   RA P            QLPP  LA S
Sbjct: 25  LHLPRLRS---PHQASRRLSALPFSRALPLPLRLRLRIPRPQLPPLPLAFS 72


>05_02_0022 + 5682045-5682301,5682477-5682720
          Length = 166

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 19/51 (37%), Positives = 21/51 (41%)
 Frame = +1

Query: 145 PRLRSRQLPATSSRXLSALWRGRATPSSAXXXXXXXXXQLPPSRLARSSTP 297
           P  R    P T+SR      RGRA  SS           L P RL R +TP
Sbjct: 6   PSARRTSAPPTASRCHPWRRRGRARRSSPPLLTFLFPIGLLPDRLPRPTTP 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,830,583
Number of Sequences: 37544
Number of extensions: 183165
Number of successful extensions: 368
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)