Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_B10
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    79   8e-16
SPBC36.10 |||mitochondrial intermembrane space protein sorting p...    65   1e-11
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    29   0.88 
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|...    26   6.2  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   8.2  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   8.2  

>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 79.0 bits (186), Expect = 8e-16
 Identities = 39/90 (43%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
 Frame = +2

Query: 236 MTRYFENTSVFNFSWDXVARGYWRRYPNPQSTHVLSEDTWSRQVRD-GCLYTKRLLTKTN 412
           MT    + +  N SW+ V+  +  RYPNP S HV+S D   R V D G LYT+RLL K  
Sbjct: 1   MTAICTDKTELNASWNTVSSAWLTRYPNPYSLHVVSADVLERYVDDEGRLYTERLLVKQG 60

Query: 413 RVPKWGERFFNAKSVKIIEESVVDPEKKIL 502
           R+P+W     N     I+E SV+DP K+ L
Sbjct: 61  RLPRWASDLLNVNKSYILERSVIDPSKQEL 90



 Score = 30.7 bits (66), Expect = 0.29
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +3

Query: 513 TRNLGYTKVMSVVE--RVEYRSAGPGQTVAKRSAWIDSQV-FGFSRAIRAFGIERFKKXC 683
           T NL + K++ V+E  R    S    +T+    A   S + FG  R ++ + ++RF++  
Sbjct: 94  TFNLDHVKILRVIEYSRFIQSSENCSKTIVDTIAKFVSPLRFGLGRRVQKYSLKRFQEQL 153

Query: 684 SQMASGFNHVLHSMY 728
           S    G  +V+   +
Sbjct: 154 SSSRRGLLYVIQQKF 168


>SPBC36.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
 Frame = +2

Query: 242 RYFENTSVFNFSWDXVARGYWRRYPNPQSTHVLSEDTWSRQVRD-GCLYTKRLLTKTNRV 418
           + FE+  +F + ++ V+  +W++YPN  +THV++ DT  R+V D G LYT+RL+T    +
Sbjct: 2   KIFESCHLFQYPFEQVSAAHWQKYPNEHATHVIAVDTLDRKVLDNGVLYTERLITCHQAL 61

Query: 419 PKWGERFFN-AKSVKIIEESVVDPEKKIL 502
           P+W  +  + A+   I E S VD + + L
Sbjct: 62  PRWILKLIDGAQDCYIRETSYVDLKARTL 90


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 440 KIFHPILELCWF*SGAALYKDNRLEPVGSMYLQIGREYSAD 318
           KI HP    C    G  +YKD++ +  G +YL++  E+  D
Sbjct: 308 KILHP--GDCLIIPGEGMYKDSKTDLRGDLYLEVDIEFPKD 346


>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 586 RPWPSVRRGSTRRFSASREP 645
           RPW  + R  + R+SAS EP
Sbjct: 15  RPWTIINRIQSERYSASYEP 34


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 382  KTTVSNLSAPCIFR*DVSTLRIWVSPPVTTRNXIPTEVKDRSI 254
            K T +NL   C+   DV   ++ +S   +     P E+KD+ I
Sbjct: 1096 KFTRNNLVGVCVLSVDVPNRKVALSARNSRTQSQPVEIKDKEI 1138


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 252 SKYLVILPFRLQCFLLQLYLVFIPKQKENXLXFQYI*M 139
           SKY  I   +++CF L +    IPKQ  + + F  + M
Sbjct: 21  SKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILIM 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,086,723
Number of Sequences: 5004
Number of extensions: 61465
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)