Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_B09
         (974 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.34 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.34
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 808 PWVXXPXPPPPRXSXXTNTXPLPSXPSXXP 897
           P    P PP P  S  +   PLP+ P   P
Sbjct: 411 PSAGAPMPPIPNMSNMSGMPPLPNMPGSMP 440



 Score = 24.6 bits (51), Expect = 1.4
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 869 PXPQXPPXXPPPRXXXRSSXPHXPLXPPXXSPP 967
           P PQ  P   P +   R S P+    PP   PP
Sbjct: 21  PGPQPSPHQSP-QAPQRGSPPNPSQGPPPGGPP 52


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 408 PLPAAERPRHSESXSRVSGRAPXTQTASP 322
           P P    P+HS S +  S  A  T +  P
Sbjct: 62  PSPTGSSPQHSGSSASTSPAARTTSSMYP 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,691
Number of Sequences: 438
Number of extensions: 4529
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32169774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)