Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_B07
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    61   2e-10
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    57   3e-09
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    55   1e-08

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 30/72 (41%), Positives = 37/72 (51%)
 Frame = +2

Query: 419 PGXAXLAFVXRIRGIXQVSPXXXXXXXXXXXXXINXGVFVRLNKATVNXLRIAXPYXAWG 598
           P    L FV RIRGI  + P             IN GVFV+ NKAT   L++  PY  +G
Sbjct: 86  PDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYG 145

Query: 599 YPTLXSVRXLVY 634
            P L +VR L+Y
Sbjct: 146 IPNLKTVRELLY 157



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/70 (27%), Positives = 27/70 (38%)
 Frame = +1

Query: 211 PXSVLXXRKXXXALRTRXLXVXLKXRSSAIXXXXXXFKXAXXYVXXXRIXXRXXIXLAXX 390
           P S+L  +K     R + +    + +++         K A  Y    R   R  I L   
Sbjct: 17  PESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAEREQIELGRK 76

Query: 391 ARXRGXYYVP 420
           AR  G YYVP
Sbjct: 77  ARAEGNYYVP 86


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 30/72 (41%), Positives = 34/72 (47%)
 Frame = +2

Query: 419 PGXAXLAFVXRIRGIXQVSPXXXXXXXXXXXXXINXGVFVRLNKATVNXLRIAXPYXAWG 598
           P    L FV RI G+  + P             IN  VFVR NKA    LRI  PY  +G
Sbjct: 84  PDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYG 143

Query: 599 YPTLXSVRXLVY 634
            P L SVR L+Y
Sbjct: 144 IPNLHSVRELIY 155



 Score = 29.1 bits (62), Expect = 0.83
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +1

Query: 595 GXPHLXECPXVSIXRGFAXLSGPRIPXTSNXXVEKXLHKPTXSVLXTSSMXIXPVGXH 768
           G P+L     +   RGF  ++G RI  + N  +E+ L K     +      I  VG H
Sbjct: 143 GIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSH 200


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 27/72 (37%), Positives = 35/72 (48%)
 Frame = +2

Query: 419 PGXAXLAFVXRIRGIXQVSPXXXXXXXXXXXXXINXGVFVRLNKATVNXLRIAXPYXAWG 598
           P    L FV RIRGI  + P             IN G+FV+ NKA    L++  PY  +G
Sbjct: 85  PHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYG 144

Query: 599 YPTLXSVRXLVY 634
            P   +VR L+Y
Sbjct: 145 IPNHKTVRELIY 156



 Score = 29.9 bits (64), Expect = 0.47
 Identities = 20/70 (28%), Positives = 27/70 (38%)
 Frame = +1

Query: 211 PXSVLXXRKXXXALRTRXLXVXLKXRSSAIXXXXXXFKXAXXYVXXXRIXXRXXIXLAXX 390
           P S+L   K     R + +    + +S+         K A  Y    R   R  I LA  
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75

Query: 391 ARXRGXYYVP 420
           AR  G Y+VP
Sbjct: 76  ARAEGNYFVP 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,447,582
Number of Sequences: 5004
Number of extensions: 14090
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)