Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_B07
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...    65   6e-11
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...    64   1e-10
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    42   8e-04

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score = 65.3 bits (152), Expect = 6e-11
 Identities = 33/69 (47%), Positives = 40/69 (57%)
 Frame = +2

Query: 428 AXLAFVXRIRGIXQVSPXXXXXXXXXXXXXINXGVFVRLNKATVNXLRIAXPYXAWGYPT 607
           A L FV RIRGI  + P             I  GVF+++NKAT+N LR   PY A+GYP 
Sbjct: 84  AKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPN 143

Query: 608 LXSVRXLVY 634
           L SVR L+Y
Sbjct: 144 LKSVRELIY 152



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +1

Query: 595 GXPHLXECPXVSIXRGFAXLSGPRIPXTSNXXVEKXLHKPTXSVLXTSSMXIXPVGXH 768
           G P+L     +   RG+  L+  RIP  +N  +E+ L K     +      I  VG H
Sbjct: 140 GYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPH 197


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 32/67 (47%), Positives = 39/67 (58%)
 Frame = +2

Query: 434 LAFVXRIRGIXQVSPXXXXXXXXXXXXXINXGVFVRLNKATVNXLRIAXPYXAWGYPTLX 613
           L FV RIRGI  + P             I  GVF+++NKAT+N LR   PY A+GYP L 
Sbjct: 85  LLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLK 144

Query: 614 SVRXLVY 634
           SVR L+Y
Sbjct: 145 SVRELIY 151


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +2

Query: 434 LAFVXRIRGIXQVSPXXXXXXXXXXXXXINXGVFVRLNKATVNXLRIAXPYXAWGYPTLX 613
           L F  RI G   + P             +  GVF++   AT+  L +  P+  +G+P L 
Sbjct: 88  LVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLK 147

Query: 614 SVRXLVY 634
           +V+ L+Y
Sbjct: 148 NVKDLIY 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,217,130
Number of Sequences: 37544
Number of extensions: 130665
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)