Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_B06
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434     33   0.22 
05_01_0499 - 4166891-4166942,4167191-4167510                           30   2.1  
02_04_0470 - 23183925-23184743,23184929-23185153                       30   2.1  
04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016     30   2.8  
03_03_0204 + 15436660-15437244,15437355-15437632,15438792-154390...    29   4.8  
02_02_0272 - 8452994-8453187,8453850-8454975                           29   6.4  
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769...    28   8.5  
11_05_0027 - 18466042-18466431,18466669-18466739,18467105-18467351     28   8.5  
01_01_0516 + 3778891-3779069,3779436-3779541,3780526-3780888           28   8.5  

>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
          Length = 418

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = -3

Query: 388 GMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMAL 272
           G   P R+SP    L+   PAEAALS  RSL S  P ++
Sbjct: 138 GEEPPRRVSPAAVVLAVLLPAEAALSFIRSLSSLAPFSI 176


>05_01_0499 - 4166891-4166942,4167191-4167510
          Length = 123

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -3

Query: 478 LIANALALRSWLLLWNKXTLPATPSXSPKPGMRVPVRLSPCPFTLSRASPAEAA 317
           LI   LALR   LL N       PS SP+   +   R  P P + + ASP+ +A
Sbjct: 5   LIIVPLALRGASLLGNAVAAAVVPSSSPEQQQQQQRRPRPPPGSKNGASPSSSA 58


>02_04_0470 - 23183925-23184743,23184929-23185153
          Length = 347

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
 Frame = -3

Query: 409 PSXSPKPGMRVPVRLSPCPFTLSRASPAEAAL-----SLWRSLKSADPMALSTFLSLPVR 245
           PS   +PGMRV  R SP     +RA P   +L     S W       P A ST  S   R
Sbjct: 159 PSLPAQPGMRVAHRWSPAK---ARALPPPPSLRYPSRSSWDGADLDGPTAASTTTSRRRR 215

Query: 244 GTFR-AAPEVPSEFTVKLPACLRARVATCLPLA 149
              R   P   S  + +   C RA +A  L  A
Sbjct: 216 RHHRLVPPPAASPLSNRQRHCCRAAIAGALESA 248


>04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016
          Length = 360

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 288 ADFNDRHKLSAASAGLALDNVNGHGLSLTGTRIPGFGEXLGVAGKVXL 431
           A  N+R + S AS  +A  + + HG+ + G   P +G     AG + L
Sbjct: 173 AGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGALSL 220


>03_03_0204 +
           15436660-15437244,15437355-15437632,15438792-15439068,
           15439160-15439405,15440853-15441134
          Length = 555

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -3

Query: 430 KXTLPATPSXSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKS 290
           K + P+  +    P    P  ++P P    + +PA  A+  WR+ K+
Sbjct: 59  KTSSPSVAAPEKAPVAAAPAPVAPAPAATKQVAPARWAVDSWRTKKA 105


>02_02_0272 - 8452994-8453187,8453850-8454975
          Length = 439

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -3

Query: 373 VRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRG 242
           +RL P P +L RA+   A  + WR L +ADP  L  F +   RG
Sbjct: 20  LRLPPRPSSLPRAA---AVCARWRRLVTADPAFLRRFRAHHRRG 60


>12_01_0831 -
           7688342-7688772,7690678-7692610,7693142-7693915,
           7694019-7694142,7696084-7696189,7696346-7696532
          Length = 1184

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 376 PVRLSPCPFTLSRASPAEAA 317
           P+RLSP P ++SR  P+ AA
Sbjct: 153 PIRLSPSPRSMSRTRPSSAA 172


>11_05_0027 - 18466042-18466431,18466669-18466739,18467105-18467351
          Length = 235

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 479 ELAQRHPQRAQLQHAGAADWTTCSNRRWAHR*ARXTLTSS 598
           E ++R P R   ++   AD T CS+R W    AR    SS
Sbjct: 95  ESSRRVPGRGYKKYLAPADATRCSHRAWLRSEARIERFSS 134


>01_01_0516 + 3778891-3779069,3779436-3779541,3780526-3780888
          Length = 215

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 562 PPSV*TCSPVRRPSVLKLG--ALGMALGEFLIANAL 461
           PP      PV++PS  KLG  A G  +GE ++ +A+
Sbjct: 167 PPVACKIRPVKQPSATKLGSVAAGGCVGEVIVVDAI 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,742,656
Number of Sequences: 37544
Number of extensions: 344925
Number of successful extensions: 1135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)