Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_B06
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    32   0.61 
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    29   5.7  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    28   10.0 
Z78542-5|CAB01748.1|  915|Caenorhabditis elegans Hypothetical pr...    28   10.0 

>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
            F45E4.4 protein.
          Length = 2361

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -3

Query: 436  WNKXTLPATPSXSPKPGMRVPVRLSPCPFTLSRAS 332
            W K T   TPS S KP +  P R  P P   S+ S
Sbjct: 1980 WAKTTTSQTPSTSTKPTVTAPKRSDPIPIAPSQRS 2014


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
            F35A5.1 protein.
          Length = 1274

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 457  LRSWLLLWNKXTLPATPSXSPKPGMRVPVRLSPCPFTLSRASPAEAA 317
            ++ W   W     PA P  +P+P  + PV     P      SP +AA
Sbjct: 983  VKKWKPPWEDDDEPAEPVSAPEPEKKTPVLAKKAPAKPRDPSPKKAA 1029



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/62 (24%), Positives = 25/62 (40%)
 Frame = -3

Query: 457 LRSWLLLWNKXTLPATPSXSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPM 278
           ++ W   W     PA P   P+P  + PV     P      SP +A  +   +   A P+
Sbjct: 793 VKKWKPPWEDDDAPAEPVNVPEPEKKTPVLAKKTPVKPRDPSPKKAVPAKPSTKTDAPPV 852

Query: 277 AL 272
           ++
Sbjct: 853 SV 854



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = -3

Query: 457  LRSWLLLWNKXTLPATPSXSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADP 281
            ++ W   W     P+ P  +P+P  + PV     P   +    +EAA        S DP
Sbjct: 1051 VKKWKPPWEDDDEPSEPVSAPEPEKKTPVLAKKAPTKPATKPDSEAAADPVSGPTSKDP 1109


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -3

Query: 397 PKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRAAPEV 218
           P P    PV+ +P   T S A PA+ A  + +   SA P + S  +  P   T +A+ + 
Sbjct: 402 PAPQQAPPVQQNPPKPTPSPAPPAQKAQPVTQQQASAPPTSPSAPVQAPNTPTQKASSQD 461

Query: 217 P 215
           P
Sbjct: 462 P 462


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
 Frame = -3

Query: 436 WNKXTLPATPSXSPKPGMRVP-VRLSPCPFTLSRASPAEAALSLWRSLKSA-----DPMA 275
           ++  T P TP  +P P  R+P    SP P  +S++ P    L    +  S       P A
Sbjct: 454 YSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPA 513

Query: 274 LSTFLSLPVRGTFRAAPEVPSE 209
           L   +S P      A PE  S+
Sbjct: 514 LEQEISGPPTVRLTAVPESNSD 535


>Z78542-5|CAB01748.1|  915|Caenorhabditis elegans Hypothetical
           protein F20D1.6 protein.
          Length = 915

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 541 YMFKQKVGASLSAXHSDV 594
           Y+FK+ +GAS+SA H +V
Sbjct: 215 YLFKEHLGASISAFHEEV 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,886,819
Number of Sequences: 27780
Number of extensions: 240954
Number of successful extensions: 668
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)