Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_B05
         (1048 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1011 - 21708503-21708544,21708689-21708898,21709000-217091...    35   0.12 
04_03_0988 - 21469811-21469831,21470823-21471047,21471327-214716...    35   0.12 
02_04_0214 - 20976977-20977171,20977499-20977611,20978041-209781...    34   0.22 
02_01_0001 - 3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,6...    33   0.38 
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383...    32   0.66 
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323...    32   0.87 
11_01_0618 - 4941906-4942118,4942231-4942343,4942534-4942651,494...    31   1.1  
02_04_0182 + 20719782-20720033,20720502-20720605,20720693-207210...    31   1.5  
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781...    29   4.6  

>04_03_1011 -
           21708503-21708544,21708689-21708898,21709000-21709112,
           21709232-21709349,21709386-21709412,21709671-21709808,
           21710069-21710194,21710279-21710467,21710598-21710885,
           21710937-21711024,21711120-21711298
          Length = 505

 Score = 34.7 bits (76), Expect = 0.12
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = +3

Query: 90  NIAMRVLIFTAIALLGLALGDEVPTEENVLVLSKANFDXVISTTEYXPXEFYAPW 254
           + A+ +LI ++   +G+   +E+  +E VL L   NF  V++   +   +FYAPW
Sbjct: 8   SFALAILISSSPTAVGVDATEEL--KEAVLTLDAGNFSEVVAKHPFIVVKFYAPW 60


>04_03_0988 -
           21469811-21469831,21470823-21471047,21471327-21471634,
           21471864-21472234,21472327-21472430,21473086-21473325
          Length = 422

 Score = 34.7 bits (76), Expect = 0.12
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +3

Query: 105 VLIFTAIALLGLALGDEVPTEENVLVLSKANFDXVISTTEYXPXEFYAPW 254
           +L+  +      A  +E P +  V+ L +++F+  +   +Y   +FYAPW
Sbjct: 21  LLLLLSFHAAAAAAAEEFPRDGRVIELDESSFEAALGAIDYLFVDFYAPW 70


>02_04_0214 -
           20976977-20977171,20977499-20977611,20978041-20978158,
           20978585-20978701,20978836-20978973,20979193-20979318,
           20979827-20980015,20980539-20980863,20980977-20981134
          Length = 492

 Score = 33.9 bits (74), Expect = 0.22
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = +3

Query: 120 AIALLGLALGDEVPTEENVLVLSKANFDXVISTTEYXPXEFYAPW 254
           A ALL LA        E VL L   NF  V+   ++   EFYAPW
Sbjct: 10  AFALLLLA-SSAAAEGEAVLTLDAGNFTEVVGAHDFIVVEFYAPW 53


>02_01_0001 -
           3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,
           6419-6493,6619-6705,6873-6953,7021-7163,7262-7430,
           7538-7667,7753-8255
          Length = 577

 Score = 33.1 bits (72), Expect = 0.38
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 165 EENVLVLSKANFDXVISTTEYXPXEFYAPWLRXLQ 269
           E +V +LS ANF   +++  +   EFYAPW    Q
Sbjct: 72  ETHVFLLSAANFSDFLASHRHVMVEFYAPWCAHCQ 106


>01_03_0161 +
           13337265-13337297,13337880-13338017,13338211-13338308,
           13338395-13338450,13338664-13338781,13338889-13338916,
           13339021-13339112,13339321-13339477,13339569-13339693,
           13339785-13339884,13339991-13340059
          Length = 337

 Score = 32.3 bits (70), Expect = 0.66
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = +1

Query: 214 QPXSTSXLNSMLHG------CGHCKSLAPEYXKV 297
           Q  S S ++S+ H       CGHCK LAPEY K+
Sbjct: 10  QEFSISKISSVTHRSIYLVRCGHCKKLAPEYEKL 43


>05_01_0410 -
           3234455-3234466,3234851-3234950,3235037-3235161,
           3235244-3235400,3235644-3235735,3235828-3235855,
           3235949-3236066,3236411-3236466,3236556-3236653,
           3236864-3236948,3237428-3237600
          Length = 347

 Score = 31.9 bits (69), Expect = 0.87
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 256 CGHCKSLAPEYXKV 297
           CGHCK LAPEY K+
Sbjct: 59  CGHCKKLAPEYEKL 72



 Score = 29.5 bits (63), Expect = 4.6
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +3

Query: 102 RVLIFTAIALLGLALGDEVPTEENVLVLSKANFDXVISTTEYXPXEFYAPW 254
           R  + + + L+  A      + ++VL L+++ F+  +        EFYAPW
Sbjct: 8   RKALASLLLLVAAAAAVSTASADDVLALTESTFEKEVGQDRAALVEFYAPW 58


>11_01_0618 -
           4941906-4942118,4942231-4942343,4942534-4942651,
           4942762-4942881,4942964-4943101,4943392-4943517,
           4943659-4943847,4943951-4944238,4944344-4944374,
           4945014-4945216
          Length = 512

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +1

Query: 256 CGHCKSLAPEYXK 294
           CGHCK LAPEY K
Sbjct: 69  CGHCKKLAPEYEK 81



 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 168 ENVLVLSKANFDXVISTTEYXPXEFYAPW 254
           E VL L    FD  ++   +   EFYAPW
Sbjct: 40  EAVLTLDADGFDEAVAKHPFMVVEFYAPW 68


>02_04_0182 +
           20719782-20720033,20720502-20720605,20720693-20721066,
           20721302-20721609,20721853-20722092
          Length = 425

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 153 EVPTEENVLVLSKANFDXVISTTEYXPXEFYAPW 254
           ++P +  VL L   NFD  +        +FYAPW
Sbjct: 41  QIPRDGRVLELDDGNFDAAVRAAGLLFVDFYAPW 74


>09_04_0345 +
           16876489-16876614,16876718-16876876,16877989-16878102,
           16878701-16878882,16879142-16879241,16879597-16879638,
           16879818-16879994,16880084-16880175,16880633-16880779,
           16880832-16881036
          Length = 447

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 256 CGHCKSLAPEYXK 294
           CGHCK LAPE+ K
Sbjct: 195 CGHCKKLAPEWKK 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,328,740
Number of Sequences: 37544
Number of extensions: 212550
Number of successful extensions: 372
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3094456940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)