Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_B02
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911 49 6e-06
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 46 4e-05
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734... 46 4e-05
09_06_0272 - 21962495-21962524,21962742-21962918 31 1.6
12_01_0314 - 2395113-2395760,2396151-2396738,2397218-2397252,239... 29 5.0
06_01_0048 + 436156-436406,436514-436693,436725-437133 29 5.0
05_01_0564 - 4919294-4919391,4919491-4919620,4919700-4919789,491... 29 5.0
04_02_0017 - 8572400-8572732,8572818-8572919,8573138-8573230,857... 29 6.7
01_06_0997 + 33676441-33676758,33678223-33678314,33678443-336785... 28 8.8
>02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911
Length = 51
Score = 48.8 bits (111), Expect = 6e-06
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +3
Query: 282 RVYRSLCPNEWVDKWDNQRAEGTFAG 359
+ YRSLCP EW+++W QRA GTFAG
Sbjct: 24 KCYRSLCPGEWIERWKEQRANGTFAG 49
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 46.0 bits (104), Expect = 4e-05
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3
Query: 282 RVYRSLCPNEWVDKWDNQRAEGTFAG 359
+ YRSLCP+EW+++W+ QR GTF G
Sbjct: 228 KYYRSLCPSEWIERWNEQRENGTFPG 253
>03_03_0210 +
15470680-15470715,15473088-15473342,15473417-15473499,
15473617-15473698,15474886-15474939
Length = 169
Score = 46.0 bits (104), Expect = 4e-05
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +3
Query: 282 RVYRSLCPNEWVDKWDNQRAEGTFAG 359
+ YRSLCP EWV++W+ QR GTF G
Sbjct: 142 KYYRSLCPGEWVERWNEQRENGTFPG 167
>09_06_0272 - 21962495-21962524,21962742-21962918
Length = 68
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 372 GSKSYRRRCLRRAGCPTCRPTHWGRET 292
G +R++ G P CRP HW R T
Sbjct: 11 GGGDFRQKVWSMTGGPYCRPVHWRRNT 37
>12_01_0314 -
2395113-2395760,2396151-2396738,2397218-2397252,
2397546-2397632,2397913-2397985,2398648-2398714,
2398795-2398931,2400196-2400217,2400733-2400807,
2402281-2402365,2402605-2403334
Length = 848
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 369 SKSYRRRCLRRAGCPTCRPTHWGRETCTRVLKEXHG 262
S+ RRR LRRA C CR + C R+ + G
Sbjct: 113 SQRQRRRLLRRAVCAVCRRSSTTATRCERMTRWRRG 148
>06_01_0048 + 436156-436406,436514-436693,436725-437133
Length = 279
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -1
Query: 177 GXRGAKGAXLXDGGRXEXTXAEGGXGXSRGLXXRXREKWQ 58
G GA+GA DGG+ A GG G G R W+
Sbjct: 198 GRLGARGASGGDGGQLGARGATGGGGGDLGARRSGRWVWR 237
>05_01_0564 -
4919294-4919391,4919491-4919620,4919700-4919789,
4919882-4919987,4920087-4920187,4920347-4920442,
4920549-4920648,4920761-4920897,4920980-4921111,
4921222-4921320,4921397-4921594,4921715-4921892,
4922020-4922075,4922168-4922320,4922422-4922514,
4922605-4922706,4922817-4922878,4922995-4923090,
4923354-4923453,4923546-4923617,4923728-4923775,
4923853-4923996
Length = 796
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 228 PXAXKFAXXNPRHAXLSRRVYRSLCPNEWVDKWDNQR 338
P +++ N + +S+R L +WVD WD+ R
Sbjct: 492 PYVWEYSRLNISNNVMSKRKLNKLVTEKWVDGWDDPR 528
>04_02_0017 -
8572400-8572732,8572818-8572919,8573138-8573230,
8573391-8573519,8573781-8574025,8574184-8574453,
8574590-8574752,8575965-8576063
Length = 477
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -1
Query: 420 DLIKTNRNKLKHRERLGSKSYR 355
+L KTNR+K+K+ GS+SY+
Sbjct: 306 ELNKTNRSKVKYHHTTGSRSYK 327
>01_06_0997 +
33676441-33676758,33678223-33678314,33678443-33678540,
33678824-33678979,33679106-33679731,33679826-33679896,
33679987-33680241,33680337-33680454,33680595-33680766,
33680854-33681395
Length = 815
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 177 GXRGAKGAXLXDGGRXEXTXAEGGXGXSRGLXXRXREKW 61
G GA+GA GGR + A GG G G+ R +W
Sbjct: 30 GRNGARGAS-GGGGRFGASGAAGGGGGDLGVRRSCRWEW 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,458,594
Number of Sequences: 37544
Number of extensions: 250568
Number of successful extensions: 946
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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