Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_A03
         (870 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic ri...    51   6e-06
CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.                51   6e-06
BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, larg...    51   6e-06
BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, larg...    51   6e-06
AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1 pr...    51   6e-06
CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.                49   3e-05
AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal phosph...    48   3e-05

>M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic
           ribosomal phosphoprotein P1 mRNA, complete cds. ).
          Length = 114

 Score = 50.8 bits (116), Expect = 6e-06
 Identities = 29/74 (39%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +2

Query: 245 PXWPGLFAKALEGXNVRXLITNIGSG--VXXXXXXXXXXXXXXXXXXXXEEXXXXXXXXX 418
           P WPGLFAKAL   N+  LI N+G+G                       EE         
Sbjct: 41  PFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEE 100

Query: 419 XXXSDDDMGFGLFD 460
              SDDDMGFGLFD
Sbjct: 101 SEESDDDMGFGLFD 114


>CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 50.8 bits (116), Expect = 6e-06
 Identities = 29/74 (39%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +2

Query: 245 PXWPGLFAKALEGXNVRXLITNIGSG--VXXXXXXXXXXXXXXXXXXXXEEXXXXXXXXX 418
           P WPGLFAKAL   N+  LI N+G+G                       EE         
Sbjct: 41  PFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEE 100

Query: 419 XXXSDDDMGFGLFD 460
              SDDDMGFGLFD
Sbjct: 101 SEESDDDMGFGLFD 114


>BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 50.8 bits (116), Expect = 6e-06
 Identities = 29/74 (39%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +2

Query: 245 PXWPGLFAKALEGXNVRXLITNIGSG--VXXXXXXXXXXXXXXXXXXXXEEXXXXXXXXX 418
           P WPGLFAKAL   N+  LI N+G+G                       EE         
Sbjct: 41  PFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEE 100

Query: 419 XXXSDDDMGFGLFD 460
              SDDDMGFGLFD
Sbjct: 101 SEESDDDMGFGLFD 114


>BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 50.8 bits (116), Expect = 6e-06
 Identities = 29/74 (39%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +2

Query: 245 PXWPGLFAKALEGXNVRXLITNIGSG--VXXXXXXXXXXXXXXXXXXXXEEXXXXXXXXX 418
           P WPGLFAKAL   N+  LI N+G+G                       EE         
Sbjct: 41  PFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEE 100

Query: 419 XXXSDDDMGFGLFD 460
              SDDDMGFGLFD
Sbjct: 101 SEESDDDMGFGLFD 114


>AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1
           protein.
          Length = 114

 Score = 50.8 bits (116), Expect = 6e-06
 Identities = 29/74 (39%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +2

Query: 245 PXWPGLFAKALEGXNVRXLITNIGSG--VXXXXXXXXXXXXXXXXXXXXEEXXXXXXXXX 418
           P WPGLFAKAL   N+  LI N+G+G                       EE         
Sbjct: 41  PFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEE 100

Query: 419 XXXSDDDMGFGLFD 460
              SDDDMGFGLFD
Sbjct: 101 SEESDDDMGFGLFD 114


>CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 48.8 bits (111), Expect = 3e-05
 Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +2

Query: 245 PXWPGLFAKALEGXNVRXLITNIGSG--VXXXXXXXXXXXXXXXXXXXXEEXXXXXXXXX 418
           P WPGLFAKAL   N+  LI ++G+G                       EE         
Sbjct: 41  PFWPGLFAKALANVNIGSLICDVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEE 100

Query: 419 XXXSDDDMGFGLFD 460
              SDDDMGFGLFD
Sbjct: 101 SEESDDDMGFGLFD 114


>AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal
           phosphoprotein P1 protein.
          Length = 113

 Score = 48.4 bits (110), Expect = 3e-05
 Identities = 28/73 (38%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = +2

Query: 245 PXWPGLFAKALEGXNVRXLITNIGSG--VXXXXXXXXXXXXXXXXXXXXEEXXXXXXXXX 418
           P WPGLFAKAL   N+  LI N+G+G                       EE         
Sbjct: 41  PFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEE 100

Query: 419 XXXSDDDMGFGLF 457
              SDDDMGFGLF
Sbjct: 101 SEESDDDMGFGLF 113


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,004,478
Number of Sequences: 237096
Number of extensions: 596667
Number of successful extensions: 658
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)