Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_A02
(1092 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.37
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.49
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.6
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 4.6
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 27 4.6
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.37
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +3
Query: 909 PPPXKKKXKKNXXXXXGGGPPPPKXXXPXPXXPPPXGXPP 1028
PP K G PP PK P P P G PP
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160
Score = 29.9 bits (64), Expect = 0.65
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +3
Query: 909 PPPXKKKXKKNXXXXXGGGPPPPKXXXPXPXXPPPXGXPP 1028
PP K G PP PK P P P G PP
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/41 (31%), Positives = 13/41 (31%)
Frame = +3
Query: 909 PPPXKKKXKKNXXXXXGGGPPPPKXXXPXPXXPPPXGXPPP 1031
PP K G PP PK P P P PP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 960 GGPPPPKXXXPXPXXPPPXGXPP 1028
G PP PK P PPP PP
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPP 1199
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.49
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 957 GGGPPPPKXXXPXPXXPPPXGXPPP 1031
GG PPPP PPP PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 6.1
Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Frame = +3
Query: 966 PPPPKXXXPXPXXPPPXGXPPP----GGXXXXXPXXXXXXXXKXPP 1091
PPPP P P P P PPP GG P PP
Sbjct: 734 PPPPAVIVPTPA-PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 966 PPPPKXXXPXPXXPPPXGXPPPG 1034
PPPP P PPP PPPG
Sbjct: 11 PPPPPPGFEPPSQPPP--PPPPG 31
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 960 GGPPPPKXXXPXPXXPPPXGXPPP 1031
G PPPP P P PP PPP
Sbjct: 7 GNPPPP---PPPPGFEPPSQPPPP 27
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 966 PPPPKXXXPXPXXPPPXGXPP 1028
PPPP P P PP PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPP 1728
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +3
Query: 966 PPPPKXXXPXPXXPPPXGXPPPGGXXXXXP 1055
PPPP P P PP PP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +3
Query: 966 PPPPKXXXPXPXXPPPXGXPPPGGXXXXXPXXXXXXXXKXPP 1091
PPPP P PPP PG P PP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 249
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +3
Query: 966 PPPPKXXXPXPXXPPPXGXPPPGGXXXXXPXXXXXXXXKXPP 1091
PPPP P PPP PG P PP
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 262
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +3
Query: 966 PPPPKXXXPXPXXPPPXGXPPPGGXXXXXPXXXXXXXXKXPP 1091
PPPP P PPP PG P PP
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 275
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +3
Query: 966 PPPPKXXXPXPXXPPPXGXPPPGGXXXXXPXXXXXXXXKXPP 1091
PPPP P PPP PG P PP
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 288
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +3
Query: 966 PPPPKXXXPXPXXPPPXGXPPPGGXXXXXPXXXXXXXXKXPP 1091
PPPP P PPP PG P PP
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 301
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +3
Query: 966 PPPPKXXXPXPXXPPPXGXPPPGGXXXXXPXXXXXXXXKXPP 1091
PPPP P PPP PG P PP
Sbjct: 273 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 314
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +3
Query: 966 PPPPKXXXPXPXXPPPXGXPPPGGXXXXXPXXXXXXXXKXPP 1091
PPPP P PPP PG P PP
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 327
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +3
Query: 966 PPPPKXXXPXPXXPPPXGXPPPGGXXXXXPXXXXXXXXKXPP 1091
PPPP P PPP PG P PP
Sbjct: 299 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 340
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/44 (27%), Positives = 16/44 (36%)
Frame = +2
Query: 881 FFXXFXXXXPPPXKKKXKKKXXSFXXGGAPPXXXXXXPPPXXPP 1012
F + PPP + + + S PP PPP PP
Sbjct: 70 FTNFYPLTAPPPYTAEPEARYNSTIHNPMPPMSQAYRPPPTEPP 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.147 0.486
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,724,806
Number of Sequences: 5004
Number of extensions: 20467
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 575740598
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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