Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_P23
         (926 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              30   0.026
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   6.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   9.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 30.3 bits (65), Expect = 0.026
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +2

Query: 338 LEEEDAEAMQQELKEAFRLYDREGNGYITTSTLKEILAA--LDDKLSNADLDGIXAEIDT 511
           L  +D  + +  +   F  YDR  NG +    L++      L++     +L  + +  DT
Sbjct: 226 LMSQDNHSKEYLVSIMFSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDT 285

Query: 512 DGSGTVDFDEF 544
           DG G ++ +EF
Sbjct: 286 DGDGKLNVNEF 296


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 202 EDLHHSQHNGTAIR*LR 252
           E +HH  HNG   R L+
Sbjct: 20  ESVHHCHHNGVVHRDLK 36


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 308 DGFCNIASHFLEEEDAEAMQQELKEAFRLYDR 403
           +G   IA H   EED+  ++++ K    + DR
Sbjct: 484 EGIRFIADHTKREEDSTRVKEDWKYVAMVLDR 515


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,260
Number of Sequences: 438
Number of extensions: 3383
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)