Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_P21
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   6.4  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   8.5  
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    26   8.5  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 809 LPPXTXPXETNLXPHXPPXPPPXXAP 886
           +PP   P + +  P  PP PPP   P
Sbjct: 223 IPPTYTPKQADPLPAPPPPPPPTLPP 248


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 226  HCAARNVVRACWKTGPATW*LLTIVVVNAGSHAQNI 119
            HC A N  ++ W+     W   T  ++  G H  NI
Sbjct: 1673 HCNAFNFAKSHWEPVIEPWTFSTTAIMKDGMHEVNI 1708


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 399 TLATXIPQPYYSNMGTSXDWAYHTEPQEXACRAYKNXGC 515
           T A+  P P   N   S ++  HT+ Q    RA  N  C
Sbjct: 223 TQASTAPNPQEINYQWSHEYRPHTQYQNNLLRAQPNVNC 261


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 232 IAHCAARNVVRACWKTGPATW 170
           IAHC+A+  V + +  G ATW
Sbjct: 202 IAHCSAQGKVGSGFDVGAATW 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,189
Number of Sequences: 5004
Number of extensions: 44274
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)