Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_P21
(905 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 31 0.95
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 30 2.2
07_01_0080 + 587674-588510 30 2.2
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 2.9
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 25 4.1
09_04_0464 + 17820164-17820181,17820972-17821065,17821251-178214... 29 5.1
03_01_0515 - 3864796-3865425 29 6.7
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 28 8.9
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 31.5 bits (68), Expect = 0.95
Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Frame = +2
Query: 716 PXPRGGLXXXATXPARXIXPPKLQXXSXXHXLPPXTXPXETNLXPHXP-PXPPPXXAP 886
P P+GG P PP Q + H PP P P P P PPP P
Sbjct: 12 PPPQGGFPPQPP-PMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQP 68
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 812 PPXTXPXETNLXPHXPPXPPPXXAP 886
PP T P L P PP PPP P
Sbjct: 1165 PPATPPPPPPLSPSLPPPPPPPPLP 1189
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +2
Query: 773 PPKLQXXSXXHXLPPXTXPXETNLXPHXPPXPPPXXAPXCXSXP 904
PP LP + P + L P PP PP P S P
Sbjct: 1137 PPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLP 1180
>07_01_0080 + 587674-588510
Length = 278
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +2
Query: 773 PPKLQXXSXXHXLPPXTXPXETNLXPHXPPXPPPXXAP 886
PP+L PP P ++ P PP PPP P
Sbjct: 79 PPRLGGDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPPP 116
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/63 (30%), Positives = 23/63 (36%)
Frame = +2
Query: 716 PXPRGGLXXXATXPARXIXPPKLQXXSXXHXLPPXTXPXETNLXPHXPPXPPPXXAPXCX 895
P P G L +T + PP++Q S P P P PP PPP
Sbjct: 504 PPPCGSLSILSTDENQL--PPEVQHESPSDRKLPSPSPTAAAPPPPPPPPPPPSGNKPAF 561
Query: 896 SXP 904
S P
Sbjct: 562 SPP 564
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 24.6 bits (51), Expect(2) = 4.1
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 827 PXETNLXPHXPPXPPP 874
P E L P PP PPP
Sbjct: 20 PPELRLPPPPPPHPPP 35
Score = 23.0 bits (47), Expect(2) = 4.1
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 848 PHXPPXPPPXXAP 886
PH PP PP AP
Sbjct: 31 PHPPPPPPLEPAP 43
>09_04_0464 +
17820164-17820181,17820972-17821065,17821251-17821429,
17821959-17822009,17822683-17822739,17822854-17822974,
17823187-17823253,17823342-17823383,17823629-17823734,
17823864-17823974,17824248-17824319,17824423-17824524,
17824597-17824758,17824961-17825119
Length = 446
Score = 29.1 bits (62), Expect = 5.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 212 ECSQGLLEDRPRYLVAVDY 156
+C+ GL ED+PRY++ V Y
Sbjct: 231 QCTAGLPEDKPRYVMGVGY 249
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/32 (34%), Positives = 12/32 (37%)
Frame = +2
Query: 809 LPPXTXPXETNLXPHXPPXPPPXXAPXCXSXP 904
+PP P P PP PPP P P
Sbjct: 70 MPPPPPPPSVTSSPPPPPLPPPPPPPAASPPP 101
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 812 PPXTXPXETNLXPHXPPXPPP 874
PP P + N P PP PPP
Sbjct: 359 PPPPPPPKLNTAPKPPPPPPP 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,277,775
Number of Sequences: 37544
Number of extensions: 374402
Number of successful extensions: 1652
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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