Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_P21
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    62   5e-12
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.8  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 62.5 bits (145), Expect = 5e-12
 Identities = 35/109 (32%), Positives = 49/109 (44%)
 Frame = +3

Query: 198 ALTTFLAAQCAIAGDHLWPADATDKVLEDPNYDFIXXXXXXXXXXXXNRLSEISDWKVLL 377
           AL  F  A   + G+      ++   + D +YDFI             RLSE+S+WKVLL
Sbjct: 40  ALLNFFVATSPVIGEPCQRVHSSR--IPDLSYDFIVVGGGAARAVVAGRLSEVSNWKVLL 97

Query: 378 VEAGGNPTLATXIPQPYYSNMGTSXDWAYHTEPQEXACRAYKNXGCXWP 524
           +EAG +      IP      +G   DW Y+T  +  AC +     C WP
Sbjct: 98  LEAGPDEPAGAEIPSNLQLYLGGDLDWKYYTTNESHACLS-TGGSCYWP 145



 Score = 28.7 bits (61), Expect = 0.077
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 523 PCGKVLXGSXXINLMFYXRGNXAXYXQWAAHGNXRW 630
           P GK L G+   + M Y RG+   Y +W   G   W
Sbjct: 145 PRGKNLGGTTLHHGMAYHRGHRKDYERWVQQGAFGW 180


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 307 SELVPPDRLSPIVLAKYL 360
           +E++PP  L+  +L KYL
Sbjct: 286 AEIIPPTSLTVPLLGKYL 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,609
Number of Sequences: 438
Number of extensions: 3758
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)