Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_P20
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.8  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    26   8.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 21/72 (29%), Positives = 23/72 (31%)
 Frame = +2

Query: 632 APPXPPXXXXXXXXXXXXXXXKXSGPXXXPXPPPQXGGEKNPXFXXKNXXAPXGXXPAPX 811
           APP PP                 S P   P PPP  G   +P        AP    PA  
Sbjct: 229 APPIPPSIPSSRPPERVP---SLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAIN 285

Query: 812 XXXRXPXXLFPP 847
              + P  L PP
Sbjct: 286 STSKPP--LPPP 295


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 27/111 (24%), Positives = 27/111 (24%), Gaps = 10/111 (9%)
 Frame = +2

Query: 593  PXXXPPPPXXXPRAPPXPPXXXXXXXXXXXXXXXKXSGPXXXPXPPPQXGGE---KNPXF 763
            P   PP P     APP P                    P     P P   G      P  
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSV 1147

Query: 764  XXKNXXAPXGXXPAPXXXXRXPXXLFP-------PXXAAXXXXSPPPXXRP 895
                  AP G  P P      P    P       P  AA     PPP   P
Sbjct: 1148 AAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 76  YSAAXCLNVRL*IYINLQ*ISQRSYPSSSL 165
           Y+AA  LN++  +Y+NL      + P+S+L
Sbjct: 63  YNAADALNLQFLLYLNLDMSEMSTVPASTL 92


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 593 PXXXPPPPXXXPRAPPXPP 649
           P   PPPP   P + P PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPP 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,927,189
Number of Sequences: 5004
Number of extensions: 26504
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)