Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_P18
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.50 
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    29   0.87 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   2.0  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    28   2.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   2.7  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    27   4.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.1  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   8.1  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = +1

Query: 493 VTPXTXPATKSPXSLPPXXXTTEFTSXSCPPRTXXT*SSITXXVLVMT-VSXTGXTXXXP 669
           VTP   P + S  S PP   +T  T  S  P    + S  T   +  T  S T  T   P
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360

Query: 670 XPTPLATSXP 699
             +  +TS P
Sbjct: 361 PTSTSSTSTP 370



 Score = 29.9 bits (64), Expect = 0.50
 Identities = 21/69 (30%), Positives = 28/69 (40%)
 Frame = +1

Query: 493 VTPXTXPATKSPXSLPPXXXTTEFTSXSCPPRTXXT*SSITXXVLVMTVSXTGXTXXXPX 672
           VTP   P + S  S PP   +T  T  S  P    + S  T   +  T + T  T   P 
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST--TPVTPT 412

Query: 673 PTPLATSXP 699
             P ++S P
Sbjct: 413 VPPTSSSTP 421



 Score = 29.5 bits (63), Expect = 0.66
 Identities = 25/108 (23%), Positives = 36/108 (33%)
 Frame = +1

Query: 493 VTPXTXPATKSPXSLPPXXXTTEFTSXSCPPRTXXT*SSITXXVLVMTVSXTGXTXXXPX 672
           +TP   P + S  S+P    +T  T  +  P    + S  T   +  T + T  T   P 
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST--TPVTPT 304

Query: 673 PTPLATSXPXXXPXGXXPVLPPXNXPSXPXVXTPCLKNMPRPPKNPCT 816
             P +TS     P          +    P   T C  +   PP    T
Sbjct: 305 VPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST 352



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 24/108 (22%), Positives = 34/108 (31%)
 Frame = +1

Query: 493 VTPXTXPATKSPXSLPPXXXTTEFTSXSCPPRTXXT*SSITXXVLVMTVSXTGXTXXXPX 672
           +TP   P + S  S+P    +T  T  +  P    + S  T   +    S +  T   P 
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPT 250

Query: 673 PTPLATSXPXXXPXGXXPVLPPXNXPSXPXVXTPCLKNMPRPPKNPCT 816
             P +TS                N    P   T C  +   PP    T
Sbjct: 251 VPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST 298


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 219 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 362
           ET   K S   K +K  +   + +++++  K NT++ A Q W+K  KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 186 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 302
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 777 PEEYAPPPQKPVH 815
           PE+ APPPQ+P H
Sbjct: 16  PEQQAPPPQQPAH 28


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 22/94 (23%), Positives = 27/94 (28%)
 Frame = +1

Query: 511  PATKSPXSLPPXXXTTEFTSXSCPPRTXXT*SSITXXVLVMTVSXTGXTXXXPXPTPLAT 690
            P  ++  S+ P        S + P     T S  T      T S T        P P   
Sbjct: 872  PMRRAAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPPPKV 931

Query: 691  SXPXXXPXGXXPVLPPXNXPSXPXVXTPCLKNMP 792
                  P      +PP   PS P   TP     P
Sbjct: 932  GETYHPPTASGTRVPPVQQPSHPNPYTPVAPQSP 965


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 782 RIC--PAPPKTRAXPWGXRGTXPSP 850
           R+C  P PPKT   P+G  G+ PSP
Sbjct: 227 RVCSAPDPPKTSMPPFGSAGS-PSP 250


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +1

Query: 667  PXPTPLATSXPXXXPXGXXPVLPPXNXPSXPXVXTPCLKNMPRPP 801
            P P P +   P   P    P +PP +    P V  P +   P PP
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPS--EAPPVPKPSVGVPPVPP 1212


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = -3

Query: 322 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 143
           M F    ++   T   + +PF   R+  HL      S +T+ +Y+ +  T     ++++ 
Sbjct: 1   MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57

Query: 142 EASAHTARTKA 110
             +A  A T A
Sbjct: 58  NGAAKEAATAA 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,589
Number of Sequences: 5004
Number of extensions: 48666
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)