Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_P17
         (935 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    25   0.33 
07_03_1450 + 26620178-26620456,26622122-26622775                       29   5.3  
04_01_0034 - 401208-402923                                             24   6.1  
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996...    28   9.3  
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300...    28   9.3  

>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 25.0 bits (52), Expect(2) = 9.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 887 PXPAPPPXPXPP 922
           P P PPP P PP
Sbjct: 563 PPPPPPPPPPPP 574



 Score = 24.6 bits (51), Expect(3) = 0.33
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 893 PAPPPXPXPP 922
           PAPPP P PP
Sbjct: 663 PAPPPPPPPP 672



 Score = 23.4 bits (48), Expect(3) = 1.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 893 PAPPPXPXPP 922
           P+PPP P PP
Sbjct: 600 PSPPPPPPPP 609



 Score = 23.0 bits (47), Expect(3) = 0.33
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 896 APPPXPXPPXA 928
           APPP P PP A
Sbjct: 711 APPPPPPPPPA 721



 Score = 22.2 bits (45), Expect(3) = 1.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 887 PXPAPPPXPXP 919
           P P PPP P P
Sbjct: 566 PPPPPPPPPLP 576



 Score = 22.2 bits (45), Expect(3) = 0.33
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 887 PXPAPPPXPXP 919
           P P PPP P P
Sbjct: 618 PPPPPPPPPLP 628



 Score = 21.4 bits (43), Expect(2) = 9.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 899 PPPXPXPPXAXN 934
           PPP P PP   N
Sbjct: 585 PPPPPPPPPLPN 596



 Score = 21.4 bits (43), Expect(3) = 1.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 899 PPPXPXPPXAXN 934
           PPP P PP   N
Sbjct: 618 PPPPPPPPPLPN 629


>07_03_1450 + 26620178-26620456,26622122-26622775
          Length = 310

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = +2

Query: 455 RRKEHVSPXPPKRHEP*KXPXCWXXSIXSPPPDQHHXQSTLXSEVAT 595
           RRK    P PP  H+P             PPP  +H    +  E AT
Sbjct: 123 RRKSSQPPPPPMPHQPYHHHHHLNPFSLPPPPPAYHHHHLIQEEPAT 169


>04_01_0034 - 401208-402923
          Length = 571

 Score = 24.2 bits (50), Expect(2) = 6.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 875 LXLXPXPAPPPXP 913
           L L P PAPPP P
Sbjct: 299 LPLQPRPAPPPPP 311



 Score = 23.0 bits (47), Expect(2) = 6.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 887 PXPAPPPXPXPPXA 928
           P P PPP   PP A
Sbjct: 322 PPPPPPPLDPPPRA 335


>10_06_0039 -
           9966744-9967535,9968241-9968482,9969021-9969223,
           9969333-9970645
          Length = 849

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 887 PXPAPPPXPXPPXAXN 934
           P PAPPP P PP   N
Sbjct: 327 PPPAPPPPPPPPSRFN 342


>05_01_0384 +
           2997465-2999777,2999960-3000035,3003027-3003102,
           3003571-3004442,3004592-3004773,3005206-3005295,
           3005388-3005675,3005776-3005997,3006053-3006133,
           3006634-3006861
          Length = 1475

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 887 PXPAPPPXPXPPXAXN 934
           P P PPP P PP A N
Sbjct: 579 PPPPPPPPPPPPAAGN 594


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,041,937
Number of Sequences: 37544
Number of extensions: 191952
Number of successful extensions: 1856
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1647
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)