Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_P14
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   0.56 
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    28   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.7  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    26   6.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.6  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   8.6  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   8.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 780 PPXXPXXPPPPPXXPXP 830
           PP  P  PPPPP    P
Sbjct: 5   PPGNPPPPPPPPGFEPP 21



 Score = 25.4 bits (53), Expect(2) = 0.56
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 790 PPXXPPPPPXP 822
           PP  PPPPP P
Sbjct: 20  PPSQPPPPPPP 30



 Score = 22.6 bits (46), Expect(2) = 0.56
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 772 SYXPPXPPXXPPPP 813
           S  P  PP  PPPP
Sbjct: 3   SLPPGNPPPPPPPP 16


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = -1

Query: 433 FLPSNXFQXPPWPCPFRXLRSAPLETLGRRAFELLQHGLGXRPSKPW 293
           FLP N    PP+P PF+               EL +H  G R   P+
Sbjct: 173 FLPFNPAAQPPFPPPFKMRGKRGFGMRHEHNSELRRHSPGNRRFNPY 219


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 781 PPXPPXXPPPPPXP 822
           PP PP  P PPP P
Sbjct: 467 PPLPPAAPAPPPAP 480


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
 Frame = +1

Query: 745 PPPLX*IXXSYXPPXPP----XXPPPPPXP 822
           PPP   +     PP PP      PPPPP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 748 PPLX*IXXSYXPPXPPXXPPPP 813
           PP      S  PP PP  PPPP
Sbjct: 184 PPSAPSLPSAVPPMPPKVPPPP 205


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 319 VRAATAQTPFGQESPGERSGXRETGKAKEXFGNXSRAETSXATG 450
           + A  + +  G  +PG + G RET K K        AE    TG
Sbjct: 168 IDAVLSSSSNGHVTPGSKKGSRETLKKKPFVDENIPAELHTTTG 211


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
 Frame = +1

Query: 745  PPPLX*IXXSYXPPXPPXXP--PPPPXP 822
            PPP+        PP P   P  PPPP P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +2

Query: 188 TSSGHRTPHQGVHKDFRNNSLTSLTKGXKDAQDFXPGLGRTGSESVLQ 331
           T   H    QG   DFR+   +  T+G      F P L  T + SV Q
Sbjct: 297 THDTHPPKQQGPISDFRSIPSSPKTEGAPSNAQFRPSLPATPNGSVPQ 344


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 191 SSGHRTPHQGVHKDFRNNSLTSLTKGXKDAQDFXP 295
           S G    ++G   +F+NNSLTS T    D  +  P
Sbjct: 20  SHGDSFVNEGPPSNFKNNSLTSSTHSSTDHVNVLP 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,209
Number of Sequences: 5004
Number of extensions: 45509
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)