Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_P11
         (937 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.41 
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    28   2.2  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   2.2  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    27   5.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 18/53 (33%), Positives = 20/53 (37%)
 Frame = +2

Query: 641 PPPXXSPXPPTXTPXXHXXPXHSPLXAXALNXPPXPCHPNTLXIALSPXPXPP 799
           PPP   P P    P     P   P  A  +  PP P  P  +  A  P P PP
Sbjct: 732 PPP---PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 29.9 bits (64), Expect = 0.54
 Identities = 16/53 (30%), Positives = 19/53 (35%)
 Frame = +2

Query: 641 PPPXXSPXPPTXTPXXHXXPXHSPLXAXALNXPPXPCHPNTLXIALSPXPXPP 799
           PPP  +   PT  P     P  +P+       PP P  P        P P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMG---GPPPPPPPPGVAGAGPPPPPPPP 782


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 174 TPARVL*TRSELTPAVNSRLCHLXKGKNAKVSFDFTPQFSTTK 302
           +P +V+  R +   AVN R+C+  + K++++S   +     TK
Sbjct: 468 SPDKVIQLREQNGVAVNGRVCYPTRNKHSEISAQSSSSLGVTK 510


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = +2

Query: 644 PPXXSPXPPTXTPXXHXXPXHSPLXAXALNXPPXPCHPNTLXIALSPXPXPP 799
           PP     P   TP     P   P        PP P  PN     +S  P PP
Sbjct: 108 PPKEPALPSRGTPSLPSRPGSRPSVLNQEQVPPPPVRPN----VMSQMPPPP 155


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 341 FSAILQPKEAGLELSCRELWCKVERNLXVFPFXEVAQSTVNS 216
           F  +LQ K AG  +S  +LW +      V P    A +T +S
Sbjct: 220 FEQVLQKKNAGFNVSITDLWGRALALKLVNPLTGGANTTFSS 261


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +2

Query: 641  PPPXXSPXPPTXTPXXHXXPXHSPLXAXALNXPPXP 748
            PPP   P PP+  P     P   P    A + P  P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,639
Number of Sequences: 5004
Number of extensions: 39796
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)