Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_P10
         (990 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    38   0.003
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.58 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.1  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   5.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 29/99 (29%), Positives = 34/99 (34%)
 Frame = +3

Query: 639 PPPSXRAXGALXPXPXXXTXXSXXXXPPPFXXXFAXXXXTXPXPLXXSPVXPXXPRPPXX 818
           PPPS R  G     P      S    PPP     +    + P P       P  P PP  
Sbjct: 315 PPPSRRNRGK----PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP--PPPPRS 368

Query: 819 GXSRGXPPPXPCXTARSXXNXPPXXPPFXXXPXPYSXPL 935
             S G  PP P  ++R+  N P   P       P   PL
Sbjct: 369 APSTGRQPP-PLSSSRAVSNPPAPPPAIPGRSAPALPPL 406



 Score = 36.3 bits (80), Expect = 0.007
 Identities = 29/105 (27%), Positives = 29/105 (27%)
 Frame = +3

Query: 618 SXXXSXXPPPSXRAXGALXPXPXXXTXXSXXXXPPPFXXXFAXXXXTXPXPLXXSPVXPX 797
           S   S  PPP      A    P      S    PPP     A      P PL  S     
Sbjct: 331 SSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP---RSAPSTGRQPPPLSSSRAVSN 387

Query: 798 XPRPPXXGXSRGXPPPXPCXTARSXXNXPPXXPPFXXXPXPYSXP 932
            P PP     R  P   P   A      P   PP      P S P
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP 432


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 14/46 (30%), Positives = 16/46 (34%)
 Frame = +3

Query: 762 PXPLXXSPVXPXXPRPPXXGXSRGXPPPXPCXTARSXXNXPPXXPP 899
           P  +  +P     P PP      G PPP P          PP  PP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 20/71 (28%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
 Frame = +3

Query: 717 PPPFXXXFAXXXXTXPXPLXX-SPVX--PXXPRPPXXGXSRGXPPPXPCXTARSXXNXPP 887
           PPP            P P+   +P+   P  P PP      G PPP P   A S      
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRY 792

Query: 888 XXPPFXXXPXP 920
             P     P P
Sbjct: 793 YAPAPQAEPEP 803


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 19/63 (30%), Positives = 21/63 (33%)
 Frame = +3

Query: 768  PLXXSPVXPXXPRPPXXGXSRGXPPPXPCXTARSXXNXPPXXPPFXXXPXPYSXPLLXLX 947
            P+   PV P    PP    S   PPP P          PP  PP    P     P L   
Sbjct: 1686 PVSTPPVRPQSAAPPQ--MSAPTPPPPPMSVP-----PPPSAPPMPAGPPSAPPPPLPAS 1738

Query: 948  NXP 956
            + P
Sbjct: 1739 SAP 1741



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +3

Query: 756  TXPXPLXXSPVXPXXPRPPXXGXSRGXPPPXPCXTARSXXN 878
            T P P    P  P  P P   G     PPP P  +A S  N
Sbjct: 1706 TPPPPPMSVPPPPSAP-PMPAGPPSAPPPPLPASSAPSVPN 1745


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 23/98 (23%), Positives = 26/98 (26%)
 Frame = +3

Query: 639 PPPSXRAXGALXPXPXXXTXXSXXXXPPPFXXXFAXXXXTXPXPLXXSPVXPXXPRPPXX 818
           PPP     G   P P           PPP            P P+   P     P P   
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPM--HHEPGEHMPPPPMHHEPGEHMPPPPMHH 266

Query: 819 GXSRGXPPPXPCXTARSXXNXPPXXPPFXXXPXPYSXP 932
                 PPP          + PP  PP    P  +  P
Sbjct: 267 EPGEHMPPPP--MHHEPGEHMPP--PPMHHEPGEHMPP 300



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 17/69 (24%), Positives = 18/69 (26%)
 Frame = +3

Query: 639 PPPSXRAXGALXPXPXXXTXXSXXXXPPPFXXXFAXXXXTXPXPLXXSPVXPXXPRPPXX 818
           PPP     G   P P           PPP            P P+   P     P P   
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPM--HHEPGEHMPPPPMHHEPGEHMPPPPMHH 331

Query: 819 GXSRGXPPP 845
                 PPP
Sbjct: 332 EPGEHMPPP 340


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +3

Query: 783  PVXPXXPRPPXXGXSRGXPPPXPCXTARSXXNXPPXXPP 899
            PV P    PP    S G PP  P  TA          PP
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,306,350
Number of Sequences: 5004
Number of extensions: 13795
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)