Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_P08
         (844 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    29   5.5  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    28   7.2  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    28   7.2  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    28   7.2  
Z92790-5|CAI79208.1|  169|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 25/86 (29%), Positives = 29/86 (33%)
 Frame = +1

Query: 238 GGGKVFGTLGQNDDGLFGKAGYNREIFNDXRGQLTGXAYGTRXLXPGGDSXNYGGRLDWA 417
           GGG   G  G   DG +G  G+         G + G  YG   +  GG    YGG  D  
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGGGGD-G 221

Query: 418 XKNAQAAXDINXQIGGRSGMTASGSG 495
                         GG  GM   G G
Sbjct: 222 GYGPSGGYGGGYGPGGGYGMGGGGGG 247


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 376 GGDSXNYGGRLDWAXKNAQAAXDINXQIGGRSGMTASGSG 495
           GG+  N GG      +N Q   + N   GG  G+TASG G
Sbjct: 171 GGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 209


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 376 GGDSXNYGGRLDWAXKNAQAAXDINXQIGGRSGMTASGSG 495
           GG+  N GG      +N Q   + N   GG  G+TASG G
Sbjct: 192 GGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 230


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 376 GGDSXNYGGRLDWAXKNAQAAXDINXQIGGRSGMTASGSG 495
           GG+  N GG      +N Q   + N   GG  G+TASG G
Sbjct: 177 GGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 215


>Z92790-5|CAI79208.1|  169|Caenorhabditis elegans Hypothetical
           protein H03G16.6 protein.
          Length = 169

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 310 LCCNRLYRIVHRRSVPKCRRPSLLPFSCPT 221
           LC N  Y++      PK R+ +L+P S PT
Sbjct: 86  LCTNMSYQLQKMVVFPKVRKEALMPTSSPT 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,839,365
Number of Sequences: 27780
Number of extensions: 294538
Number of successful extensions: 550
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)