Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_P06
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    75   1e-14
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    68   2e-12
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    31   0.28 
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    28   1.5  

>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 42/99 (42%), Positives = 57/99 (57%)
 Frame = +1

Query: 139 TIITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLE 318
           T I SP++    GPY+QAI A+  +Y SG + +  + +++ G    QTRQ L NL+ VL 
Sbjct: 40  TPINSPKL-SSAGPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQEVLT 97

Query: 319 AGGASLESVVKTTVLLASMDDFXTFNKVYAXYXPXACPA 435
             G+SL  +VK  + LA MDDF   NKVY    P   PA
Sbjct: 98  EAGSSLNKIVKVNIFLADMDDFAAVNKVYTEVLPDPKPA 136


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 68.1 bits (159), Expect = 2e-12
 Identities = 33/87 (37%), Positives = 48/87 (55%)
 Frame = +1

Query: 175 GPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVKT 354
           GPY+QA+ +   ++ SG   + +D   V G  + QTR  ++NL  VL   G+SLE +VK 
Sbjct: 15  GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73

Query: 355 TVLLASMDDFXTFNKVYAXYXPXACPA 435
            + L  +DDF   N+VY    P   PA
Sbjct: 74  NIFLTDIDDFAAMNEVYKEMLPDPMPA 100


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +1

Query: 172 VGPYSQAILADKTLYISGILGL 237
           +GPYSQ+I A+  ++ISG +GL
Sbjct: 421 IGPYSQSICANGVVFISGQIGL 442


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 259 CGGAEAQTRQALDNLRHVLEAGGASLESVVK 351
           C G +  T++ +D LR  ++AGG   E  +K
Sbjct: 88  CRGNQLMTQEEIDELRANIKAGGLRAEEAIK 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,606
Number of Sequences: 5004
Number of extensions: 34545
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)